Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12456 | 5' | -62.4 | NC_003324.1 | + | 25568 | 0.78 | 0.04697 |
Target: 5'- cCGCCUUCGCCGaGauuGuCCUCGGCGGUg -3' miRNA: 3'- aGCGGAAGCGGC-Cgu-C-GGAGCCGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 40410 | 0.66 | 0.355778 |
Target: 5'- uUCGCCUUCGuCUGGC-GCUUCGuCGu- -3' miRNA: 3'- -AGCGGAAGC-GGCCGuCGGAGCcGCua -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 18287 | 0.66 | 0.355778 |
Target: 5'- -gGCCgacgCGCgGGCaaucgcugccccGGCCUUGGUGAg -3' miRNA: 3'- agCGGaa--GCGgCCG------------UCGGAGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 44673 | 0.66 | 0.347703 |
Target: 5'- gCGCaCUUCGUCgaucgugguguuGGCAGCCUCGacGUGGg -3' miRNA: 3'- aGCG-GAAGCGG------------CCGUCGGAGC--CGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 13089 | 0.66 | 0.331951 |
Target: 5'- cCGCCgacCGCCGccgacGCAGCCUCGcUGAc -3' miRNA: 3'- aGCGGaa-GCGGC-----CGUCGGAGCcGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 24853 | 0.67 | 0.302039 |
Target: 5'- cCGUCUuggcaaucugcUCGCgGGCGGCCUCGuuGGa -3' miRNA: 3'- aGCGGA-----------AGCGgCCGUCGGAGCcgCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 31776 | 0.67 | 0.299164 |
Target: 5'- aCGCCU--GCCGGCcucuucgGGCCcguauucggcaacgUCGGCGAg -3' miRNA: 3'- aGCGGAagCGGCCG-------UCGG--------------AGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 21832 | 0.67 | 0.283735 |
Target: 5'- cCGCCUucugcaucaguUCGCgcagccgggccuccuCGGCGGCCUUGGCc-- -3' miRNA: 3'- aGCGGA-----------AGCG---------------GCCGUCGGAGCCGcua -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 50681 | 0.67 | 0.280998 |
Target: 5'- gCGCCaaucUUCGaCGGUGacccccGCCUCGGCGGUa -3' miRNA: 3'- aGCGG----AAGCgGCCGU------CGGAGCCGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 26148 | 0.68 | 0.267628 |
Target: 5'- cUCGUCccgcUGCUGGCGGCCugcaucauucugUCGGCGGUc -3' miRNA: 3'- -AGCGGaa--GCGGCCGUCGG------------AGCCGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 14445 | 0.68 | 0.267628 |
Target: 5'- gCGCCcaUGCCGGCguccaAGCaUCGGCGGa -3' miRNA: 3'- aGCGGaaGCGGCCG-----UCGgAGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 36804 | 0.68 | 0.248542 |
Target: 5'- aUUGCCUcgUCGCCGuaGGCaUCGaGCGAUa -3' miRNA: 3'- -AGCGGA--AGCGGCcgUCGgAGC-CGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 23159 | 0.68 | 0.248542 |
Target: 5'- aCGUCUU-GCCGGC-GCCcacgguauggUCGGCGAg -3' miRNA: 3'- aGCGGAAgCGGCCGuCGG----------AGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 23777 | 0.68 | 0.242435 |
Target: 5'- cCGa-UUCGgCGGCgcguucGGCCUCGGCGAg -3' miRNA: 3'- aGCggAAGCgGCCG------UCGGAGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 29372 | 0.69 | 0.236454 |
Target: 5'- cUUGCCcUCGUCGGUgacgacaacGGCCUCGGUa-- -3' miRNA: 3'- -AGCGGaAGCGGCCG---------UCGGAGCCGcua -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 17424 | 0.7 | 0.183234 |
Target: 5'- gUCGCCcUCGUCGGUcaugacgcggAGCC-CGGUGAa -3' miRNA: 3'- -AGCGGaAGCGGCCG----------UCGGaGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 43397 | 0.72 | 0.135724 |
Target: 5'- cCGCCgaucugaccgcagUCGUgGGUGGUCUCGGCGAc -3' miRNA: 3'- aGCGGa------------AGCGgCCGUCGGAGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 42564 | 0.73 | 0.122255 |
Target: 5'- cUUGCCgcaaugaccgUGCCGGCAGCCUCGcuguaggccgugacGCGAUa -3' miRNA: 3'- -AGCGGaa--------GCGGCCGUCGGAGC--------------CGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 20173 | 0.74 | 0.099239 |
Target: 5'- aCGCU---GCCGGCAGCCUCGGUcaGAg -3' miRNA: 3'- aGCGGaagCGGCCGUCGGAGCCG--CUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 32474 | 1.05 | 0.000396 |
Target: 5'- gUCGCCUUCGCCGGCAGCCUCGGCGAUc -3' miRNA: 3'- -AGCGGAAGCGGCCGUCGGAGCCGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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