Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12456 | 5' | -62.4 | NC_003324.1 | + | 32474 | 1.05 | 0.000396 |
Target: 5'- gUCGCCUUCGCCGGCAGCCUCGGCGAUc -3' miRNA: 3'- -AGCGGAAGCGGCCGUCGGAGCCGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 25568 | 0.78 | 0.04697 |
Target: 5'- cCGCCUUCGCCGaGauuGuCCUCGGCGGUg -3' miRNA: 3'- aGCGGAAGCGGC-Cgu-C-GGAGCCGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 20173 | 0.74 | 0.099239 |
Target: 5'- aCGCU---GCCGGCAGCCUCGGUcaGAg -3' miRNA: 3'- aGCGGaagCGGCCGUCGGAGCCG--CUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 2505 | 0.74 | 0.10198 |
Target: 5'- cCGCCggCGUCGGCGGCUUCaucaucggcguuGGCGGUg -3' miRNA: 3'- aGCGGaaGCGGCCGUCGGAG------------CCGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 42564 | 0.73 | 0.122255 |
Target: 5'- cUUGCCgcaaugaccgUGCCGGCAGCCUCGcuguaggccgugacGCGAUa -3' miRNA: 3'- -AGCGGaa--------GCGGCCGUCGGAGC--------------CGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 42763 | 0.72 | 0.133567 |
Target: 5'- cUCGCCagcggUUGCCGGUccugguGGCC-CGGCGAa -3' miRNA: 3'- -AGCGGa----AGCGGCCG------UCGGaGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 43397 | 0.72 | 0.135724 |
Target: 5'- cCGCCgaucugaccgcagUCGUgGGUGGUCUCGGCGAc -3' miRNA: 3'- aGCGGa------------AGCGgCCGUCGGAGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 44535 | 0.7 | 0.178074 |
Target: 5'- aUCGCCguuucaaaCGCCGGCcaucagcgaccgaAGUCUCGGCGc- -3' miRNA: 3'- -AGCGGaa------GCGGCCG-------------UCGGAGCCGCua -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 53572 | 0.7 | 0.178537 |
Target: 5'- -gGCa-UCGCCGGCauucGGCCUCGGCu-- -3' miRNA: 3'- agCGgaAGCGGCCG----UCGGAGCCGcua -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 17424 | 0.7 | 0.183234 |
Target: 5'- gUCGCCcUCGUCGGUcaugacgcggAGCC-CGGUGAa -3' miRNA: 3'- -AGCGGaAGCGGCCG----------UCGGaGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 43496 | 0.7 | 0.200025 |
Target: 5'- uUCGCCgUCGCCGagaccacccacgacuGCGGUCagaUCGGCGGUu -3' miRNA: 3'- -AGCGGaAGCGGC---------------CGUCGG---AGCCGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 33368 | 0.69 | 0.213756 |
Target: 5'- uUUGCCUUCGUCGGCcauGUCgaugacuaUGGCGAUg -3' miRNA: 3'- -AGCGGAAGCGGCCGu--CGGa-------GCCGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 23249 | 0.69 | 0.2143 |
Target: 5'- cUCGCCgaccauaccgugggCGCCGGCAagacguuugccGCCauugcaUCGGCGAUg -3' miRNA: 3'- -AGCGGaa------------GCGGCCGU-----------CGG------AGCCGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 29372 | 0.69 | 0.236454 |
Target: 5'- cUUGCCcUCGUCGGUgacgacaacGGCCUCGGUa-- -3' miRNA: 3'- -AGCGGaAGCGGCCG---------UCGGAGCCGcua -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 23777 | 0.68 | 0.242435 |
Target: 5'- cCGa-UUCGgCGGCgcguucGGCCUCGGCGAg -3' miRNA: 3'- aGCggAAGCgGCCG------UCGGAGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 36804 | 0.68 | 0.248542 |
Target: 5'- aUUGCCUcgUCGCCGuaGGCaUCGaGCGAUa -3' miRNA: 3'- -AGCGGA--AGCGGCcgUCGgAGC-CGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 23159 | 0.68 | 0.248542 |
Target: 5'- aCGUCUU-GCCGGC-GCCcacgguauggUCGGCGAg -3' miRNA: 3'- aGCGGAAgCGGCCGuCGG----------AGCCGCUa -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 13169 | 0.68 | 0.248542 |
Target: 5'- -gGCUgcgUCGgCGGCGGUCggcggCGGCGGUa -3' miRNA: 3'- agCGGa--AGCgGCCGUCGGa----GCCGCUA- -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 42938 | 0.68 | 0.251021 |
Target: 5'- -gGCCg--GCCGGCAGCCUcgaauaccagcaauaCGGCGu- -3' miRNA: 3'- agCGGaagCGGCCGUCGGA---------------GCCGCua -5' |
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12456 | 5' | -62.4 | NC_003324.1 | + | 30327 | 0.68 | 0.266973 |
Target: 5'- aUCGCCgauggUGUCGGCGGUggcgucgCUCGGCGc- -3' miRNA: 3'- -AGCGGaa---GCGGCCGUCG-------GAGCCGCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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