miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12456 5' -62.4 NC_003324.1 + 2505 0.74 0.10198
Target:  5'- cCGCCggCGUCGGCGGCUUCaucaucggcguuGGCGGUg -3'
miRNA:   3'- aGCGGaaGCGGCCGUCGGAG------------CCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 2606 0.67 0.309317
Target:  5'- gUCGCCUguUCGUCGGUGGCgUcaCGGCu-- -3'
miRNA:   3'- -AGCGGA--AGCGGCCGUCGgA--GCCGcua -5'
12456 5' -62.4 NC_003324.1 + 5577 0.67 0.280998
Target:  5'- cCGCCUUCGUCGugcggaaaGCAGUCUUGaGCGu- -3'
miRNA:   3'- aGCGGAAGCGGC--------CGUCGGAGC-CGCua -5'
12456 5' -62.4 NC_003324.1 + 11016 0.67 0.316729
Target:  5'- -aGCCUUCaccCCGGCGGUgUUGGCa-- -3'
miRNA:   3'- agCGGAAGc--GGCCGUCGgAGCCGcua -5'
12456 5' -62.4 NC_003324.1 + 11237 0.67 0.309317
Target:  5'- aCGCUgugcgaGCCGGCcGCCagacCGGCGAa -3'
miRNA:   3'- aGCGGaag---CGGCCGuCGGa---GCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 13089 0.66 0.331951
Target:  5'- cCGCCgacCGCCGccgacGCAGCCUCGcUGAc -3'
miRNA:   3'- aGCGGaa-GCGGC-----CGUCGGAGCcGCUa -5'
12456 5' -62.4 NC_003324.1 + 13169 0.68 0.248542
Target:  5'- -gGCUgcgUCGgCGGCGGUCggcggCGGCGGUa -3'
miRNA:   3'- agCGGa--AGCgGCCGUCGGa----GCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 14445 0.68 0.267628
Target:  5'- gCGCCcaUGCCGGCguccaAGCaUCGGCGGa -3'
miRNA:   3'- aGCGGaaGCGGCCG-----UCGgAGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 14669 0.66 0.339761
Target:  5'- cCGCCUgcgcCGCCGGCcGCUUgcgcCGGCa-- -3'
miRNA:   3'- aGCGGAa---GCGGCCGuCGGA----GCCGcua -5'
12456 5' -62.4 NC_003324.1 + 16996 0.66 0.371479
Target:  5'- aUCGgUgaCGCUGGCAGCCgccaccuugcaaaUCGGCGc- -3'
miRNA:   3'- -AGCgGaaGCGGCCGUCGG-------------AGCCGCua -5'
12456 5' -62.4 NC_003324.1 + 17424 0.7 0.183234
Target:  5'- gUCGCCcUCGUCGGUcaugacgcggAGCC-CGGUGAa -3'
miRNA:   3'- -AGCGGaAGCGGCCG----------UCGGaGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 18287 0.66 0.355778
Target:  5'- -gGCCgacgCGCgGGCaaucgcugccccGGCCUUGGUGAg -3'
miRNA:   3'- agCGGaa--GCGgCCG------------UCGGAGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 20173 0.74 0.099239
Target:  5'- aCGCU---GCCGGCAGCCUCGGUcaGAg -3'
miRNA:   3'- aGCGGaagCGGCCGUCGGAGCCG--CUa -5'
12456 5' -62.4 NC_003324.1 + 21076 0.66 0.372318
Target:  5'- cUGCCUU-GUCGGCcGCCgCGGCGc- -3'
miRNA:   3'- aGCGGAAgCGGCCGuCGGaGCCGCua -5'
12456 5' -62.4 NC_003324.1 + 21299 0.66 0.324273
Target:  5'- gCGCCgUCGCCuucGGCAGCUcgaaagccaGGCGGUu -3'
miRNA:   3'- aGCGGaAGCGG---CCGUCGGag-------CCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 21832 0.67 0.283735
Target:  5'- cCGCCUucugcaucaguUCGCgcagccgggccuccuCGGCGGCCUUGGCc-- -3'
miRNA:   3'- aGCGGA-----------AGCG---------------GCCGUCGGAGCCGcua -5'
12456 5' -62.4 NC_003324.1 + 23159 0.68 0.248542
Target:  5'- aCGUCUU-GCCGGC-GCCcacgguauggUCGGCGAg -3'
miRNA:   3'- aGCGGAAgCGGCCGuCGG----------AGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 23249 0.69 0.2143
Target:  5'- cUCGCCgaccauaccgugggCGCCGGCAagacguuugccGCCauugcaUCGGCGAUg -3'
miRNA:   3'- -AGCGGaa------------GCGGCCGU-----------CGG------AGCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 23777 0.68 0.242435
Target:  5'- cCGa-UUCGgCGGCgcguucGGCCUCGGCGAg -3'
miRNA:   3'- aGCggAAGCgGCCG------UCGGAGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 24853 0.67 0.302039
Target:  5'- cCGUCUuggcaaucugcUCGCgGGCGGCCUCGuuGGa -3'
miRNA:   3'- aGCGGA-----------AGCGgCCGUCGGAGCcgCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.