miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12456 5' -62.4 NC_003324.1 + 56135 0.66 0.372318
Target:  5'- -aGCCUggaaGCCGaCGGCCgUGGCGAc -3'
miRNA:   3'- agCGGAag--CGGCcGUCGGaGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 53572 0.7 0.178537
Target:  5'- -gGCa-UCGCCGGCauucGGCCUCGGCu-- -3'
miRNA:   3'- agCGgaAGCGGCCG----UCGGAGCCGcua -5'
12456 5' -62.4 NC_003324.1 + 52380 0.66 0.339761
Target:  5'- gUCGCagaCGCCGGCcGCCccgaaUCgGGCGGUa -3'
miRNA:   3'- -AGCGgaaGCGGCCGuCGG-----AG-CCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 50681 0.67 0.280998
Target:  5'- gCGCCaaucUUCGaCGGUGacccccGCCUCGGCGGUa -3'
miRNA:   3'- aGCGG----AAGCgGCCGU------CGGAGCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 44673 0.66 0.347703
Target:  5'- gCGCaCUUCGUCgaucgugguguuGGCAGCCUCGacGUGGg -3'
miRNA:   3'- aGCG-GAAGCGG------------CCGUCGGAGC--CGCUa -5'
12456 5' -62.4 NC_003324.1 + 44535 0.7 0.178074
Target:  5'- aUCGCCguuucaaaCGCCGGCcaucagcgaccgaAGUCUCGGCGc- -3'
miRNA:   3'- -AGCGGaa------GCGGCCG-------------UCGGAGCCGCua -5'
12456 5' -62.4 NC_003324.1 + 43496 0.7 0.200025
Target:  5'- uUCGCCgUCGCCGagaccacccacgacuGCGGUCagaUCGGCGGUu -3'
miRNA:   3'- -AGCGGaAGCGGC---------------CGUCGG---AGCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 43397 0.72 0.135724
Target:  5'- cCGCCgaucugaccgcagUCGUgGGUGGUCUCGGCGAc -3'
miRNA:   3'- aGCGGa------------AGCGgCCGUCGGAGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 42938 0.68 0.251021
Target:  5'- -gGCCg--GCCGGCAGCCUcgaauaccagcaauaCGGCGu- -3'
miRNA:   3'- agCGGaagCGGCCGUCGGA---------------GCCGCua -5'
12456 5' -62.4 NC_003324.1 + 42763 0.72 0.133567
Target:  5'- cUCGCCagcggUUGCCGGUccugguGGCC-CGGCGAa -3'
miRNA:   3'- -AGCGGa----AGCGGCCG------UCGGaGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 42564 0.73 0.122255
Target:  5'- cUUGCCgcaaugaccgUGCCGGCAGCCUCGcuguaggccgugacGCGAUa -3'
miRNA:   3'- -AGCGGaa--------GCGGCCGUCGGAGC--------------CGCUA- -5'
12456 5' -62.4 NC_003324.1 + 40410 0.66 0.355778
Target:  5'- uUCGCCUUCGuCUGGC-GCUUCGuCGu- -3'
miRNA:   3'- -AGCGGAAGC-GGCCGuCGGAGCcGCua -5'
12456 5' -62.4 NC_003324.1 + 40272 0.68 0.267628
Target:  5'- -aGCgCUUCGUCGGCAuCgCUCGGCuGAUg -3'
miRNA:   3'- agCG-GAAGCGGCCGUcG-GAGCCG-CUA- -5'
12456 5' -62.4 NC_003324.1 + 39488 0.66 0.363983
Target:  5'- uUCGCCUucaacUCGUCGGCAGagaaCC-CGGCc-- -3'
miRNA:   3'- -AGCGGA-----AGCGGCCGUC----GGaGCCGcua -5'
12456 5' -62.4 NC_003324.1 + 36804 0.68 0.248542
Target:  5'- aUUGCCUcgUCGCCGuaGGCaUCGaGCGAUa -3'
miRNA:   3'- -AGCGGA--AGCGGCcgUCGgAGC-CGCUA- -5'
12456 5' -62.4 NC_003324.1 + 33368 0.69 0.213756
Target:  5'- uUUGCCUUCGUCGGCcauGUCgaugacuaUGGCGAUg -3'
miRNA:   3'- -AGCGGAAGCGGCCGu--CGGa-------GCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 32474 1.05 0.000396
Target:  5'- gUCGCCUUCGCCGGCAGCCUCGGCGAUc -3'
miRNA:   3'- -AGCGGAAGCGGCCGUCGGAGCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 31776 0.67 0.299164
Target:  5'- aCGCCU--GCCGGCcucuucgGGCCcguauucggcaacgUCGGCGAg -3'
miRNA:   3'- aGCGGAagCGGCCG-------UCGG--------------AGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 30327 0.68 0.266973
Target:  5'- aUCGCCgauggUGUCGGCGGUggcgucgCUCGGCGc- -3'
miRNA:   3'- -AGCGGaa---GCGGCCGUCG-------GAGCCGCua -5'
12456 5' -62.4 NC_003324.1 + 29557 0.66 0.339761
Target:  5'- gCGCCcgacgCGCCcGCAGCCa-GGCGGc -3'
miRNA:   3'- aGCGGaa---GCGGcCGUCGGagCCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.