miRNA display CGI


Results 41 - 44 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12456 5' -62.4 NC_003324.1 + 16996 0.66 0.371479
Target:  5'- aUCGgUgaCGCUGGCAGCCgccaccuugcaaaUCGGCGc- -3'
miRNA:   3'- -AGCgGaaGCGGCCGUCGG-------------AGCCGCua -5'
12456 5' -62.4 NC_003324.1 + 21076 0.66 0.372318
Target:  5'- cUGCCUU-GUCGGCcGCCgCGGCGc- -3'
miRNA:   3'- aGCGGAAgCGGCCGuCGGaGCCGCua -5'
12456 5' -62.4 NC_003324.1 + 56135 0.66 0.372318
Target:  5'- -aGCCUggaaGCCGaCGGCCgUGGCGAc -3'
miRNA:   3'- agCGGAag--CGGCcGUCGGaGCCGCUa -5'
12456 5' -62.4 NC_003324.1 + 26129 0.66 0.372318
Target:  5'- gCGCUUgagcuagagCGCCGGCAGaC-CGGUGAc -3'
miRNA:   3'- aGCGGAa--------GCGGCCGUCgGaGCCGCUa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.