miRNA display CGI


Results 41 - 44 of 44 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12456 5' -62.4 NC_003324.1 + 50681 0.67 0.280998
Target:  5'- gCGCCaaucUUCGaCGGUGacccccGCCUCGGCGGUa -3'
miRNA:   3'- aGCGG----AAGCgGCCGU------CGGAGCCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 52380 0.66 0.339761
Target:  5'- gUCGCagaCGCCGGCcGCCccgaaUCgGGCGGUa -3'
miRNA:   3'- -AGCGgaaGCGGCCGuCGG-----AG-CCGCUA- -5'
12456 5' -62.4 NC_003324.1 + 53572 0.7 0.178537
Target:  5'- -gGCa-UCGCCGGCauucGGCCUCGGCu-- -3'
miRNA:   3'- agCGgaAGCGGCCG----UCGGAGCCGcua -5'
12456 5' -62.4 NC_003324.1 + 56135 0.66 0.372318
Target:  5'- -aGCCUggaaGCCGaCGGCCgUGGCGAc -3'
miRNA:   3'- agCGGAag--CGGCcGUCGGaGCCGCUa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.