miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12457 5' -55.7 NC_003324.1 + 1529 0.66 0.714485
Target:  5'- -cGGCgGCAgUgGUGCGCGGcgcuAUGGCc -3'
miRNA:   3'- cuCUGgCGUgAgUACGCGCCu---UGCUG- -5'
12457 5' -55.7 NC_003324.1 + 39331 0.66 0.671179
Target:  5'- cGAGaaGCCGCGCUg--GCGagccuuCGGAACGAUg -3'
miRNA:   3'- -CUC--UGGCGUGAguaCGC------GCCUUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 35483 0.66 0.660233
Target:  5'- cGAGGgCGaggaaAC-CAUGCGCGG-GCGGCc -3'
miRNA:   3'- -CUCUgGCg----UGaGUACGCGCCuUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 6699 0.66 0.660233
Target:  5'- -uGACCugacGCACUUccuUGCGGAACGGCa -3'
miRNA:   3'- cuCUGG----CGUGAGuacGCGCCUUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 51434 0.66 0.660233
Target:  5'- -cGugCGCGCUCGaaUGCaUGGAAgGGCu -3'
miRNA:   3'- cuCugGCGUGAGU--ACGcGCCUUgCUG- -5'
12457 5' -55.7 NC_003324.1 + 31628 0.66 0.660233
Target:  5'- cGAGACCGCggGCgcgCGUG-GCGGccauucucACGACg -3'
miRNA:   3'- -CUCUGGCG--UGa--GUACgCGCCu-------UGCUG- -5'
12457 5' -55.7 NC_003324.1 + 33453 0.67 0.649262
Target:  5'- -uGGCCGgAgUUgcGCGCGGAGcCGGCa -3'
miRNA:   3'- cuCUGGCgUgAGuaCGCGCCUU-GCUG- -5'
12457 5' -55.7 NC_003324.1 + 367 0.67 0.638274
Target:  5'- cGGACagGguCUCA-GCGCGGcGCGGCu -3'
miRNA:   3'- cUCUGg-CguGAGUaCGCGCCuUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 20465 0.67 0.638274
Target:  5'- uGAGAaCGCGCUCGaucgccgcauCGCGGAGCGGg -3'
miRNA:   3'- -CUCUgGCGUGAGUac--------GCGCCUUGCUg -5'
12457 5' -55.7 NC_003324.1 + 26911 0.67 0.627282
Target:  5'- -cGACgagGCACUCA---GCGGAGCGGCg -3'
miRNA:   3'- cuCUGg--CGUGAGUacgCGCCUUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 22095 0.67 0.605319
Target:  5'- aAGGCUGCGCUCGacaUGCgccucgucgauGCGGGcuaugGCGACu -3'
miRNA:   3'- cUCUGGCGUGAGU---ACG-----------CGCCU-----UGCUG- -5'
12457 5' -55.7 NC_003324.1 + 6544 0.67 0.605319
Target:  5'- cGAGcuauCCGCACUUGUGCaCGGGAUGu- -3'
miRNA:   3'- -CUCu---GGCGUGAGUACGcGCCUUGCug -5'
12457 5' -55.7 NC_003324.1 + 3425 0.68 0.583447
Target:  5'- -uGGCUGCACUUccGCGUGGGAaaGCa -3'
miRNA:   3'- cuCUGGCGUGAGuaCGCGCCUUgcUG- -5'
12457 5' -55.7 NC_003324.1 + 14079 0.68 0.572568
Target:  5'- uGAGGUCaCACUCAUGCGCG--ACGGCc -3'
miRNA:   3'- -CUCUGGcGUGAGUACGCGCcuUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 37437 0.68 0.561737
Target:  5'- cGAGcgcauuGCCGCGCaCA-GCGCGGGAUGGa -3'
miRNA:   3'- -CUC------UGGCGUGaGUaCGCGCCUUGCUg -5'
12457 5' -55.7 NC_003324.1 + 42749 0.68 0.550963
Target:  5'- -uGGgCGCuCUCccAUGCGCGGAuCGGCa -3'
miRNA:   3'- cuCUgGCGuGAG--UACGCGCCUuGCUG- -5'
12457 5' -55.7 NC_003324.1 + 31253 0.69 0.519052
Target:  5'- -cGGCCGCACUgCGcguuuuUGCgGCGGcGACGGCu -3'
miRNA:   3'- cuCUGGCGUGA-GU------ACG-CGCC-UUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 8678 0.69 0.508575
Target:  5'- cGAaACCGCGCcCGUGaCGCGGuccuCGGCa -3'
miRNA:   3'- -CUcUGGCGUGaGUAC-GCGCCuu--GCUG- -5'
12457 5' -55.7 NC_003324.1 + 18961 0.69 0.507532
Target:  5'- -cGACCGaGC-CGUGCgugaucuGCGGGACGACu -3'
miRNA:   3'- cuCUGGCgUGaGUACG-------CGCCUUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 27184 0.7 0.474671
Target:  5'- -cGACCGCGCUgGUGUGCugcgccagaugcagGGAGCcGCa -3'
miRNA:   3'- cuCUGGCGUGAgUACGCG--------------CCUUGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.