miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12457 5' -55.7 NC_003324.1 + 42749 0.68 0.550963
Target:  5'- -uGGgCGCuCUCccAUGCGCGGAuCGGCa -3'
miRNA:   3'- cuCUgGCGuGAG--UACGCGCCUuGCUG- -5'
12457 5' -55.7 NC_003324.1 + 37437 0.68 0.561737
Target:  5'- cGAGcgcauuGCCGCGCaCA-GCGCGGGAUGGa -3'
miRNA:   3'- -CUC------UGGCGUGaGUaCGCGCCUUGCUg -5'
12457 5' -55.7 NC_003324.1 + 3425 0.68 0.583447
Target:  5'- -uGGCUGCACUUccGCGUGGGAaaGCa -3'
miRNA:   3'- cuCUGGCGUGAGuaCGCGCCUUgcUG- -5'
12457 5' -55.7 NC_003324.1 + 6544 0.67 0.605319
Target:  5'- cGAGcuauCCGCACUUGUGCaCGGGAUGu- -3'
miRNA:   3'- -CUCu---GGCGUGAGUACGcGCCUUGCug -5'
12457 5' -55.7 NC_003324.1 + 367 0.67 0.638274
Target:  5'- cGGACagGguCUCA-GCGCGGcGCGGCu -3'
miRNA:   3'- cUCUGg-CguGAGUaCGCGCCuUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 20465 0.67 0.638274
Target:  5'- uGAGAaCGCGCUCGaucgccgcauCGCGGAGCGGg -3'
miRNA:   3'- -CUCUgGCGUGAGUac--------GCGCCUUGCUg -5'
12457 5' -55.7 NC_003324.1 + 32683 1.1 0.000758
Target:  5'- aGAGACCGCACUCAUGCGCGGAACGACa -3'
miRNA:   3'- -CUCUGGCGUGAGUACGCGCCUUGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.