miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12458 3' -60.3 NC_003324.1 + 49920 0.66 0.415834
Target:  5'- -uCGCCUuCGCUGCCcCCAucGCAUUc -3'
miRNA:   3'- auGCGGAcGCGACGGcGGUucCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 35373 0.66 0.406607
Target:  5'- --gGCCUGUGCUGCUGCagccugcucGGCcgCc -3'
miRNA:   3'- augCGGACGCGACGGCGguu------CCGuaG- -5'
12458 3' -60.3 NC_003324.1 + 52624 0.66 0.397509
Target:  5'- cAUGCUUGUGCUGCCuCCc-GGCGg- -3'
miRNA:   3'- aUGCGGACGCGACGGcGGuuCCGUag -5'
12458 3' -60.3 NC_003324.1 + 28579 0.66 0.388543
Target:  5'- gGCGCCcGCGUUGCCaUCAAGGa--- -3'
miRNA:   3'- aUGCGGaCGCGACGGcGGUUCCguag -5'
12458 3' -60.3 NC_003324.1 + 16339 0.66 0.388543
Target:  5'- cGCGacgGCGUUGCCGUCGAucGCGUCg -3'
miRNA:   3'- aUGCggaCGCGACGGCGGUUc-CGUAG- -5'
12458 3' -60.3 NC_003324.1 + 16318 0.66 0.379711
Target:  5'- gGC-CCUGCGCUgGCCGCgucGGCAc- -3'
miRNA:   3'- aUGcGGACGCGA-CGGCGguuCCGUag -5'
12458 3' -60.3 NC_003324.1 + 35098 0.66 0.379711
Target:  5'- -cCGCCgccGCuGCUGCUGCUgcGGCAg- -3'
miRNA:   3'- auGCGGa--CG-CGACGGCGGuuCCGUag -5'
12458 3' -60.3 NC_003324.1 + 6154 0.66 0.371015
Target:  5'- cGCGCCgccuggaaUGCGCUGCCcgacgacauGCgaGAGGCAg- -3'
miRNA:   3'- aUGCGG--------ACGCGACGG---------CGg-UUCCGUag -5'
12458 3' -60.3 NC_003324.1 + 21499 0.67 0.365862
Target:  5'- cGCGCCcgucGCGUUgcucaaggucggacgGCCGCCAcGGcGCAUCg -3'
miRNA:   3'- aUGCGGa---CGCGA---------------CGGCGGU-UC-CGUAG- -5'
12458 3' -60.3 NC_003324.1 + 6313 0.67 0.362455
Target:  5'- gGCGCuugCUGCGCUGCugcugCGCCucGGCcuUCa -3'
miRNA:   3'- aUGCG---GACGCGACG-----GCGGuuCCGu-AG- -5'
12458 3' -60.3 NC_003324.1 + 31137 0.67 0.345751
Target:  5'- uUGCGCCUgGCGCUGCagGCCu--GCcUCg -3'
miRNA:   3'- -AUGCGGA-CGCGACGg-CGGuucCGuAG- -5'
12458 3' -60.3 NC_003324.1 + 25097 0.67 0.345751
Target:  5'- gGCGUCUGgaUGUUGgCGCCGGGGUAg- -3'
miRNA:   3'- aUGCGGAC--GCGACgGCGGUUCCGUag -5'
12458 3' -60.3 NC_003324.1 + 51539 0.67 0.345751
Target:  5'- --gGCUUGgGCUGCCGUCuugcGGCAa- -3'
miRNA:   3'- augCGGACgCGACGGCGGuu--CCGUag -5'
12458 3' -60.3 NC_003324.1 + 29475 0.67 0.337608
Target:  5'- -cCGCCUG-GCUGCgggcgCGUCGGGcGCAUCu -3'
miRNA:   3'- auGCGGACgCGACG-----GCGGUUC-CGUAG- -5'
12458 3' -60.3 NC_003324.1 + 7762 0.67 0.332789
Target:  5'- cACGCCUcgcagggagGCGCgaucgcaacgggcuuUGCCGCCGcGGCGa- -3'
miRNA:   3'- aUGCGGA---------CGCG---------------ACGGCGGUuCCGUag -5'
12458 3' -60.3 NC_003324.1 + 39386 0.67 0.329606
Target:  5'- aGCaGCUUGCGCUGCgGCUcguuGGGCu-- -3'
miRNA:   3'- aUG-CGGACGCGACGgCGGu---UCCGuag -5'
12458 3' -60.3 NC_003324.1 + 21157 0.67 0.329606
Target:  5'- cGCGCC-GCgGCgGCCGaCAAGGCAg- -3'
miRNA:   3'- aUGCGGaCG-CGaCGGCgGUUCCGUag -5'
12458 3' -60.3 NC_003324.1 + 49225 0.67 0.321744
Target:  5'- aACGCCUGCGa---CGCCAugaucGGGCAg- -3'
miRNA:   3'- aUGCGGACGCgacgGCGGU-----UCCGUag -5'
12458 3' -60.3 NC_003324.1 + 43685 0.68 0.314024
Target:  5'- -uCGCCaUGCGCUGCgCGCCGAaugucguccGGUAc- -3'
miRNA:   3'- auGCGG-ACGCGACG-GCGGUU---------CCGUag -5'
12458 3' -60.3 NC_003324.1 + 8274 0.68 0.314024
Target:  5'- -gUGCCagGCGCgcGCCGCCG-GGCAg- -3'
miRNA:   3'- auGCGGa-CGCGa-CGGCGGUuCCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.