miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12458 3' -60.3 NC_003324.1 + 51539 0.67 0.345751
Target:  5'- --gGCUUGgGCUGCCGUCuugcGGCAa- -3'
miRNA:   3'- augCGGACgCGACGGCGGuu--CCGUag -5'
12458 3' -60.3 NC_003324.1 + 17272 0.68 0.28455
Target:  5'- aGCGCCUGUGCgaccacgucaUGCaCGCuCAcuGCAUCg -3'
miRNA:   3'- aUGCGGACGCG----------ACG-GCG-GUucCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 43685 0.68 0.314024
Target:  5'- -uCGCCaUGCGCUGCgCGCCGAaugucguccGGUAc- -3'
miRNA:   3'- auGCGG-ACGCGACG-GCGGUU---------CCGUag -5'
12458 3' -60.3 NC_003324.1 + 49225 0.67 0.321744
Target:  5'- aACGCCUGCGa---CGCCAugaucGGGCAg- -3'
miRNA:   3'- aUGCGGACGCgacgGCGGU-----UCCGUag -5'
12458 3' -60.3 NC_003324.1 + 39386 0.67 0.329606
Target:  5'- aGCaGCUUGCGCUGCgGCUcguuGGGCu-- -3'
miRNA:   3'- aUG-CGGACGCGACGgCGGu---UCCGuag -5'
12458 3' -60.3 NC_003324.1 + 7762 0.67 0.332789
Target:  5'- cACGCCUcgcagggagGCGCgaucgcaacgggcuuUGCCGCCGcGGCGa- -3'
miRNA:   3'- aUGCGGA---------CGCG---------------ACGGCGGUuCCGUag -5'
12458 3' -60.3 NC_003324.1 + 29475 0.67 0.337608
Target:  5'- -cCGCCUG-GCUGCgggcgCGUCGGGcGCAUCu -3'
miRNA:   3'- auGCGGACgCGACG-----GCGGUUC-CGUAG- -5'
12458 3' -60.3 NC_003324.1 + 25097 0.67 0.345751
Target:  5'- gGCGUCUGgaUGUUGgCGCCGGGGUAg- -3'
miRNA:   3'- aUGCGGAC--GCGACgGCGGUUCCGUag -5'
12458 3' -60.3 NC_003324.1 + 31137 0.67 0.345751
Target:  5'- uUGCGCCUgGCGCUGCagGCCu--GCcUCg -3'
miRNA:   3'- -AUGCGGA-CGCGACGg-CGGuucCGuAG- -5'
12458 3' -60.3 NC_003324.1 + 34320 0.69 0.270652
Target:  5'- aGCGUUcGCGCuUGUCGUCA-GGCAUCu -3'
miRNA:   3'- aUGCGGaCGCG-ACGGCGGUuCCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 18440 0.69 0.270652
Target:  5'- --gGUCUGCGCgaccuUGCCGCCGGucGGguUCa -3'
miRNA:   3'- augCGGACGCG-----ACGGCGGUU--CCguAG- -5'
12458 3' -60.3 NC_003324.1 + 19501 0.69 0.257305
Target:  5'- gGCGUCgGCGUgcuucuUGCCGCgGAaGGCGUCc -3'
miRNA:   3'- aUGCGGaCGCG------ACGGCGgUU-CCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 47836 0.77 0.063121
Target:  5'- gACGCCUuaugaggcgGCGCUGCCGCUGAaaccguaccugaccGGCGUCa -3'
miRNA:   3'- aUGCGGA---------CGCGACGGCGGUU--------------CCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 8112 0.75 0.089556
Target:  5'- uUGCGCCUGUGCUGaaacucacCCGCCG-GGCAg- -3'
miRNA:   3'- -AUGCGGACGCGAC--------GGCGGUuCCGUag -5'
12458 3' -60.3 NC_003324.1 + 16127 0.7 0.209249
Target:  5'- cUGCGCaggGCGCUucgguagcggggGCCGCgCcAGGCAUCg -3'
miRNA:   3'- -AUGCGga-CGCGA------------CGGCG-GuUCCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 55049 0.7 0.214804
Target:  5'- gACGgCUGgGCUGCCGCgAcGGCGc- -3'
miRNA:   3'- aUGCgGACgCGACGGCGgUuCCGUag -5'
12458 3' -60.3 NC_003324.1 + 44839 0.7 0.214804
Target:  5'- aUugGCgUGCccGCUGCUGCCGuGGGCAg- -3'
miRNA:   3'- -AugCGgACG--CGACGGCGGU-UCCGUag -5'
12458 3' -60.3 NC_003324.1 + 29101 0.69 0.238301
Target:  5'- gACGCUUGCGCU-CUGCC--GGCAUa -3'
miRNA:   3'- aUGCGGACGCGAcGGCGGuuCCGUAg -5'
12458 3' -60.3 NC_003324.1 + 21662 0.69 0.243876
Target:  5'- cUGCGCCUGCGUguUGgCGUCAuggaugaAGGCAa- -3'
miRNA:   3'- -AUGCGGACGCG--ACgGCGGU-------UCCGUag -5'
12458 3' -60.3 NC_003324.1 + 4271 0.69 0.250836
Target:  5'- aUGCGCCacgGCGUUuCCGCCGGuGGCAa- -3'
miRNA:   3'- -AUGCGGa--CGCGAcGGCGGUU-CCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.