Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12458 | 3' | -60.3 | NC_003324.1 | + | 29101 | 0.69 | 0.238301 |
Target: 5'- gACGCUUGCGCU-CUGCC--GGCAUa -3' miRNA: 3'- aUGCGGACGCGAcGGCGGuuCCGUAg -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 21662 | 0.69 | 0.243876 |
Target: 5'- cUGCGCCUGCGUguUGgCGUCAuggaugaAGGCAa- -3' miRNA: 3'- -AUGCGGACGCG--ACgGCGGU-------UCCGUag -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 4271 | 0.69 | 0.250836 |
Target: 5'- aUGCGCCacgGCGUUuCCGCCGGuGGCAa- -3' miRNA: 3'- -AUGCGGa--CGCGAcGGCGGUU-CCGUag -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 19501 | 0.69 | 0.257305 |
Target: 5'- gGCGUCgGCGUgcuucuUGCCGCgGAaGGCGUCc -3' miRNA: 3'- aUGCGGaCGCG------ACGGCGgUU-CCGUAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 18440 | 0.69 | 0.270652 |
Target: 5'- --gGUCUGCGCgaccuUGCCGCCGGucGGguUCa -3' miRNA: 3'- augCGGACGCG-----ACGGCGGUU--CCguAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 34320 | 0.69 | 0.270652 |
Target: 5'- aGCGUUcGCGCuUGUCGUCA-GGCAUCu -3' miRNA: 3'- aUGCGGaCGCG-ACGGCGGUuCCGUAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 31318 | 0.73 | 0.128756 |
Target: 5'- gUGCgGCCggcgGCGCUGgCGCUggcgGGGGCAUCg -3' miRNA: 3'- -AUG-CGGa---CGCGACgGCGG----UUCCGUAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 14669 | 0.72 | 0.169136 |
Target: 5'- -cCGCCUGCGCcGCCGgCCGcuugcgccggcAGGCcgCg -3' miRNA: 3'- auGCGGACGCGaCGGC-GGU-----------UCCGuaG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 23494 | 0.71 | 0.19851 |
Target: 5'- gGCGCCaccGCGCgGCCaacgagaaaGCCGAGcGCGUCa -3' miRNA: 3'- aUGCGGa--CGCGaCGG---------CGGUUC-CGUAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 31846 | 0.69 | 0.257305 |
Target: 5'- gAgGCCggcagGCGUUGgCGCCcccaguucAAGGCAUCg -3' miRNA: 3'- aUgCGGa----CGCGACgGCGG--------UUCCGUAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 23231 | 0.69 | 0.257305 |
Target: 5'- gGCGCCgGCaagacguUUGCCGCCAuuGCAUCg -3' miRNA: 3'- aUGCGGaCGc------GACGGCGGUucCGUAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 44652 | 0.68 | 0.277531 |
Target: 5'- -cCGCCgUGuCGCUGCCGaaCGGGGuCAUCa -3' miRNA: 3'- auGCGG-AC-GCGACGGCg-GUUCC-GUAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 1504 | 0.68 | 0.28455 |
Target: 5'- uUGCGUC-GCGCUGCuCGaCGAGGCGa- -3' miRNA: 3'- -AUGCGGaCGCGACG-GCgGUUCCGUag -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 15674 | 0.68 | 0.291708 |
Target: 5'- --aGCCU-CGCUcCCGCCuuGGCAUCu -3' miRNA: 3'- augCGGAcGCGAcGGCGGuuCCGUAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 23629 | 0.68 | 0.29827 |
Target: 5'- -uCGCCgaGCGCgcccGCCGCCAcgcugugGGGCAc- -3' miRNA: 3'- auGCGGa-CGCGa---CGGCGGU-------UCCGUag -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 38164 | 0.68 | 0.306444 |
Target: 5'- gGCGCCgacGCGCU-UCGCCAgaAGGCGc- -3' miRNA: 3'- aUGCGGa--CGCGAcGGCGGU--UCCGUag -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 12910 | 0.68 | 0.306444 |
Target: 5'- aGCGUCUGCGgaGCC-CCuugcGGcGCGUCg -3' miRNA: 3'- aUGCGGACGCgaCGGcGGu---UC-CGUAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 8274 | 0.68 | 0.314024 |
Target: 5'- -gUGCCagGCGCgcGCCGCCG-GGCAg- -3' miRNA: 3'- auGCGGa-CGCGa-CGGCGGUuCCGUag -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 21157 | 0.67 | 0.329606 |
Target: 5'- cGCGCC-GCgGCgGCCGaCAAGGCAg- -3' miRNA: 3'- aUGCGGaCG-CGaCGGCgGUUCCGUag -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 6313 | 0.67 | 0.362455 |
Target: 5'- gGCGCuugCUGCGCUGCugcugCGCCucGGCcuUCa -3' miRNA: 3'- aUGCG---GACGCGACG-----GCGGuuCCGu-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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