miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12458 3' -60.3 NC_003324.1 + 23494 0.71 0.19851
Target:  5'- gGCGCCaccGCGCgGCCaacgagaaaGCCGAGcGCGUCa -3'
miRNA:   3'- aUGCGGa--CGCGaCGG---------CGGUUC-CGUAG- -5'
12458 3' -60.3 NC_003324.1 + 23629 0.68 0.29827
Target:  5'- -uCGCCgaGCGCgcccGCCGCCAcgcugugGGGCAc- -3'
miRNA:   3'- auGCGGa-CGCGa---CGGCGGU-------UCCGUag -5'
12458 3' -60.3 NC_003324.1 + 25097 0.67 0.345751
Target:  5'- gGCGUCUGgaUGUUGgCGCCGGGGUAg- -3'
miRNA:   3'- aUGCGGAC--GCGACgGCGGUUCCGUag -5'
12458 3' -60.3 NC_003324.1 + 28579 0.66 0.388543
Target:  5'- gGCGCCcGCGUUGCCaUCAAGGa--- -3'
miRNA:   3'- aUGCGGaCGCGACGGcGGUUCCguag -5'
12458 3' -60.3 NC_003324.1 + 29101 0.69 0.238301
Target:  5'- gACGCUUGCGCU-CUGCC--GGCAUa -3'
miRNA:   3'- aUGCGGACGCGAcGGCGGuuCCGUAg -5'
12458 3' -60.3 NC_003324.1 + 29475 0.67 0.337608
Target:  5'- -cCGCCUG-GCUGCgggcgCGUCGGGcGCAUCu -3'
miRNA:   3'- auGCGGACgCGACG-----GCGGUUC-CGUAG- -5'
12458 3' -60.3 NC_003324.1 + 31137 0.67 0.345751
Target:  5'- uUGCGCCUgGCGCUGCagGCCu--GCcUCg -3'
miRNA:   3'- -AUGCGGA-CGCGACGg-CGGuucCGuAG- -5'
12458 3' -60.3 NC_003324.1 + 31318 0.73 0.128756
Target:  5'- gUGCgGCCggcgGCGCUGgCGCUggcgGGGGCAUCg -3'
miRNA:   3'- -AUG-CGGa---CGCGACgGCGG----UUCCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 31846 0.69 0.257305
Target:  5'- gAgGCCggcagGCGUUGgCGCCcccaguucAAGGCAUCg -3'
miRNA:   3'- aUgCGGa----CGCGACgGCGG--------UUCCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 33676 1.08 0.000284
Target:  5'- aUACGCCUGCGCUGCCGCCAAGGCAUCa -3'
miRNA:   3'- -AUGCGGACGCGACGGCGGUUCCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 34320 0.69 0.270652
Target:  5'- aGCGUUcGCGCuUGUCGUCA-GGCAUCu -3'
miRNA:   3'- aUGCGGaCGCG-ACGGCGGUuCCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 35098 0.66 0.379711
Target:  5'- -cCGCCgccGCuGCUGCUGCUgcGGCAg- -3'
miRNA:   3'- auGCGGa--CG-CGACGGCGGuuCCGUag -5'
12458 3' -60.3 NC_003324.1 + 35373 0.66 0.406607
Target:  5'- --gGCCUGUGCUGCUGCagccugcucGGCcgCc -3'
miRNA:   3'- augCGGACGCGACGGCGguu------CCGuaG- -5'
12458 3' -60.3 NC_003324.1 + 38164 0.68 0.306444
Target:  5'- gGCGCCgacGCGCU-UCGCCAgaAGGCGc- -3'
miRNA:   3'- aUGCGGa--CGCGAcGGCGGU--UCCGUag -5'
12458 3' -60.3 NC_003324.1 + 39386 0.67 0.329606
Target:  5'- aGCaGCUUGCGCUGCgGCUcguuGGGCu-- -3'
miRNA:   3'- aUG-CGGACGCGACGgCGGu---UCCGuag -5'
12458 3' -60.3 NC_003324.1 + 43685 0.68 0.314024
Target:  5'- -uCGCCaUGCGCUGCgCGCCGAaugucguccGGUAc- -3'
miRNA:   3'- auGCGG-ACGCGACG-GCGGUU---------CCGUag -5'
12458 3' -60.3 NC_003324.1 + 44652 0.68 0.277531
Target:  5'- -cCGCCgUGuCGCUGCCGaaCGGGGuCAUCa -3'
miRNA:   3'- auGCGG-AC-GCGACGGCg-GUUCC-GUAG- -5'
12458 3' -60.3 NC_003324.1 + 44839 0.7 0.214804
Target:  5'- aUugGCgUGCccGCUGCUGCCGuGGGCAg- -3'
miRNA:   3'- -AugCGgACG--CGACGGCGGU-UCCGUag -5'
12458 3' -60.3 NC_003324.1 + 47836 0.77 0.063121
Target:  5'- gACGCCUuaugaggcgGCGCUGCCGCUGAaaccguaccugaccGGCGUCa -3'
miRNA:   3'- aUGCGGA---------CGCGACGGCGGUU--------------CCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 49225 0.67 0.321744
Target:  5'- aACGCCUGCGa---CGCCAugaucGGGCAg- -3'
miRNA:   3'- aUGCGGACGCgacgGCGGU-----UCCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.