Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12458 | 3' | -60.3 | NC_003324.1 | + | 49920 | 0.66 | 0.415834 |
Target: 5'- -uCGCCUuCGCUGCCcCCAucGCAUUc -3' miRNA: 3'- auGCGGAcGCGACGGcGGUucCGUAG- -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 51539 | 0.67 | 0.345751 |
Target: 5'- --gGCUUGgGCUGCCGUCuugcGGCAa- -3' miRNA: 3'- augCGGACgCGACGGCGGuu--CCGUag -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 52624 | 0.66 | 0.397509 |
Target: 5'- cAUGCUUGUGCUGCCuCCc-GGCGg- -3' miRNA: 3'- aUGCGGACGCGACGGcGGuuCCGUag -5' |
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12458 | 3' | -60.3 | NC_003324.1 | + | 55049 | 0.7 | 0.214804 |
Target: 5'- gACGgCUGgGCUGCCGCgAcGGCGc- -3' miRNA: 3'- aUGCgGACgCGACGGCGgUuCCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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