miRNA: 3'- aUGCggaCGCGACGGCGGUUc-CGUAG- -5'
miRNA: 3'- aUGCGGACGCGACGGcGGuuCCGUag -5'
miRNA: 3'- augCGGACGCGACGGCGguu------CCGuaG- -5'
miRNA: 3'- auGCGGAcGCGACGGcGGUucCGUAG- -5'
Results 41 - 44 of 44 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 12458 | 3' | -60.3 | NC_003324.1 | + | 16339 | 0.66 | 0.388543 |
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Target: 5'- cGCGacgGCGUUGCCGUCGAucGCGUCg -3' miRNA: 3'- aUGCggaCGCGACGGCGGUUc-CGUAG- -5' |
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| 12458 | 3' | -60.3 | NC_003324.1 | + | 52624 | 0.66 | 0.397509 |
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Target: 5'- cAUGCUUGUGCUGCCuCCc-GGCGg- -3' miRNA: 3'- aUGCGGACGCGACGGcGGuuCCGUag -5' |
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| 12458 | 3' | -60.3 | NC_003324.1 | + | 35373 | 0.66 | 0.406607 |
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Target: 5'- --gGCCUGUGCUGCUGCagccugcucGGCcgCc -3' miRNA: 3'- augCGGACGCGACGGCGguu------CCGuaG- -5' |
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| 12458 | 3' | -60.3 | NC_003324.1 | + | 49920 | 0.66 | 0.415834 |
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Target: 5'- -uCGCCUuCGCUGCCcCCAucGCAUUc -3' miRNA: 3'- auGCGGAcGCGACGGcGGUucCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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