miRNA display CGI


Results 41 - 44 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12458 3' -60.3 NC_003324.1 + 31318 0.73 0.128756
Target:  5'- gUGCgGCCggcgGCGCUGgCGCUggcgGGGGCAUCg -3'
miRNA:   3'- -AUG-CGGa---CGCGACgGCGG----UUCCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 8112 0.75 0.089556
Target:  5'- uUGCGCCUGUGCUGaaacucacCCGCCG-GGCAg- -3'
miRNA:   3'- -AUGCGGACGCGAC--------GGCGGUuCCGUag -5'
12458 3' -60.3 NC_003324.1 + 47836 0.77 0.063121
Target:  5'- gACGCCUuaugaggcgGCGCUGCCGCUGAaaccguaccugaccGGCGUCa -3'
miRNA:   3'- aUGCGGA---------CGCGACGGCGGUU--------------CCGUAG- -5'
12458 3' -60.3 NC_003324.1 + 33676 1.08 0.000284
Target:  5'- aUACGCCUGCGCUGCCGCCAAGGCAUCa -3'
miRNA:   3'- -AUGCGGACGCGACGGCGGUUCCGUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.