Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12458 | 3' | -60.3 | NC_003324.1 | + | 6313 | 0.67 | 0.362455 |
Target: 5'- gGCGCuugCUGCGCUGCugcugCGCCucGGCcuUCa -3' miRNA: 3'- aUGCG---GACGCGACG-----GCGGuuCCGu-AG- -5' |
|||||||
12458 | 3' | -60.3 | NC_003324.1 | + | 6154 | 0.66 | 0.371015 |
Target: 5'- cGCGCCgccuggaaUGCGCUGCCcgacgacauGCgaGAGGCAg- -3' miRNA: 3'- aUGCGG--------ACGCGACGG---------CGg-UUCCGUag -5' |
|||||||
12458 | 3' | -60.3 | NC_003324.1 | + | 4271 | 0.69 | 0.250836 |
Target: 5'- aUGCGCCacgGCGUUuCCGCCGGuGGCAa- -3' miRNA: 3'- -AUGCGGa--CGCGAcGGCGGUU-CCGUag -5' |
|||||||
12458 | 3' | -60.3 | NC_003324.1 | + | 1504 | 0.68 | 0.28455 |
Target: 5'- uUGCGUC-GCGCUGCuCGaCGAGGCGa- -3' miRNA: 3'- -AUGCGGaCGCGACG-GCgGUUCCGUag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home