miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12459 3' -50.6 NC_003324.1 + 49530 0.74 0.525255
Target:  5'- -cGUAUCGA--GCGGCgaggcgacgUGCAUGGUCg -3'
miRNA:   3'- gaUAUAGCUaaCGCCGa--------ACGUGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 47093 0.66 0.939952
Target:  5'- -----cCGAcacgUGCGGCgagGUGCGGCa -3'
miRNA:   3'- gauauaGCUa---ACGCCGaa-CGUGCCGg -5'
12459 3' -50.6 NC_003324.1 + 27909 0.66 0.934587
Target:  5'- ---cGUCGAa-GCGGCcacgUGCGgGGUCa -3'
miRNA:   3'- gauaUAGCUaaCGCCGa---ACGUgCCGG- -5'
12459 3' -50.6 NC_003324.1 + 22021 0.66 0.928929
Target:  5'- -cAUGUCGAgcGCaGcCUUGCGCGcGUCc -3'
miRNA:   3'- gaUAUAGCUaaCGcC-GAACGUGC-CGG- -5'
12459 3' -50.6 NC_003324.1 + 1520 0.66 0.928929
Target:  5'- -----gCGAggauccgGCGGCaguggUGCGCGGCg -3'
miRNA:   3'- gauauaGCUaa-----CGCCGa----ACGUGCCGg -5'
12459 3' -50.6 NC_003324.1 + 14569 0.66 0.922975
Target:  5'- ---cAUgGGUcGCGGCcUGCcggcgcaaGCGGCCg -3'
miRNA:   3'- gauaUAgCUAaCGCCGaACG--------UGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 6786 0.66 0.922975
Target:  5'- ---cAUCGAUguCGGCUUGCccgaacccuacaGCGuGCCg -3'
miRNA:   3'- gauaUAGCUAacGCCGAACG------------UGC-CGG- -5'
12459 3' -50.6 NC_003324.1 + 19864 0.67 0.903354
Target:  5'- -----gCGaAUUGCGGCUU-UACGGUCa -3'
miRNA:   3'- gauauaGC-UAACGCCGAAcGUGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 25608 0.67 0.896233
Target:  5'- --cUGUCGGccGCuGCUgcgccgGCACGGCUg -3'
miRNA:   3'- gauAUAGCUaaCGcCGAa-----CGUGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 43470 0.68 0.854758
Target:  5'- ---gAUCGAgcaacUUGCGGCcacgguucaugaUGCGCGGCa -3'
miRNA:   3'- gauaUAGCU-----AACGCCGa-----------ACGUGCCGg -5'
12459 3' -50.6 NC_003324.1 + 19979 0.69 0.82015
Target:  5'- ---aGUCGAUUaUGGCg-GCGCGGUCa -3'
miRNA:   3'- gauaUAGCUAAcGCCGaaCGUGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 32036 0.69 0.82015
Target:  5'- gCUGUcugcCGGcgGCGGCU--CACGGCCg -3'
miRNA:   3'- -GAUAua--GCUaaCGCCGAacGUGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 44308 0.69 0.800677
Target:  5'- -----cCGGgcGCGGUg-GCGCGGCCg -3'
miRNA:   3'- gauauaGCUaaCGCCGaaCGUGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 10014 0.69 0.780453
Target:  5'- -gAUAaCGAcgGCGGCcgaaaucaagaaUUGUGCGGCCu -3'
miRNA:   3'- gaUAUaGCUaaCGCCG------------AACGUGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 12102 0.7 0.759572
Target:  5'- uCUGUAccUGAUcGCGGagcGCGCGGCCu -3'
miRNA:   3'- -GAUAUa-GCUAaCGCCgaaCGUGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 33815 1.14 0.001496
Target:  5'- gCUAUAUCGAUUGCGGCUUGCACGGCCg -3'
miRNA:   3'- -GAUAUAGCUAACGCCGAACGUGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 38009 0.67 0.888828
Target:  5'- -----gCGGUUGCGGC--GCACGGg- -3'
miRNA:   3'- gauauaGCUAACGCCGaaCGUGCCgg -5'
12459 3' -50.6 NC_003324.1 + 52070 0.71 0.668104
Target:  5'- -gAUGUCcgcaccauaugcagGAaUGCGGCUUGCG-GGCCu -3'
miRNA:   3'- gaUAUAG--------------CUaACGCCGAACGUgCCGG- -5'
12459 3' -50.6 NC_003324.1 + 8884 0.71 0.671495
Target:  5'- ---gGUCGcAUUGuUGGCgaacUGUACGGCCa -3'
miRNA:   3'- gauaUAGC-UAAC-GCCGa---ACGUGCCGG- -5'
12459 3' -50.6 NC_003324.1 + 21382 0.71 0.716244
Target:  5'- -gAUAUCGccggcgagGCGGCgaaCGCGGCCg -3'
miRNA:   3'- gaUAUAGCuaa-----CGCCGaacGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.