miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12464 5' -52.4 NC_003324.1 + 36252 0.67 0.847609
Target:  5'- uGCUg-CAGCagGUCGGCGgcgugacggauGAGAACCu -3'
miRNA:   3'- gCGGaaGUUGagCAGCCGU-----------CUCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 27096 0.77 0.323706
Target:  5'- aGCCUgcgccaaggacUCGAgUCGUgGGCAGAGA-CCg -3'
miRNA:   3'- gCGGA-----------AGUUgAGCAgCCGUCUCUuGG- -5'
12464 5' -52.4 NC_003324.1 + 49287 0.76 0.348336
Target:  5'- gGCgUUCGGaUCGUCGGCAGgaagaucgaGGAGCCg -3'
miRNA:   3'- gCGgAAGUUgAGCAGCCGUC---------UCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 5417 0.73 0.500588
Target:  5'- gCGCCguuggugUCGAgaUCGUCGGCGucGAGGAUCa -3'
miRNA:   3'- -GCGGa------AGUUg-AGCAGCCGU--CUCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 53686 0.72 0.531345
Target:  5'- uCGUCgcgCAGCUCGUCGaGUgucaugucgcaaaGGGGGACCg -3'
miRNA:   3'- -GCGGaa-GUUGAGCAGC-CG-------------UCUCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 4323 0.72 0.543192
Target:  5'- uCGaCCUUCAcCUCGUCGG-AGaAGAACUu -3'
miRNA:   3'- -GC-GGAAGUuGAGCAGCCgUC-UCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 6114 0.71 0.631256
Target:  5'- -cCCUaagagCAugUCGUCGGCAG-GAGCg -3'
miRNA:   3'- gcGGAa----GUugAGCAGCCGUCuCUUGg -5'
12464 5' -52.4 NC_003324.1 + 49541 0.7 0.653468
Target:  5'- gGCauagUC--CUCGUCGGCAGAGGugauauucuGCCa -3'
miRNA:   3'- gCGga--AGuuGAGCAGCCGUCUCU---------UGG- -5'
12464 5' -52.4 NC_003324.1 + 8671 0.7 0.675599
Target:  5'- gCGCCcgUGACgCGguccUCGGCAGuGAGCCa -3'
miRNA:   3'- -GCGGaaGUUGaGC----AGCCGUCuCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 38120 0.69 0.751135
Target:  5'- cCGCCgucUCGugUCgGUCGGCGGAauguuGAcgcGCCc -3'
miRNA:   3'- -GCGGa--AGUugAG-CAGCCGUCU-----CU---UGG- -5'
12464 5' -52.4 NC_003324.1 + 49605 0.68 0.761527
Target:  5'- uCGCCUcgCcGCUCGauaCGGCcGAGAguGCCa -3'
miRNA:   3'- -GCGGAa-GuUGAGCa--GCCGuCUCU--UGG- -5'
12464 5' -52.4 NC_003324.1 + 43369 0.68 0.761527
Target:  5'- gCGCCUgCGAggCGUCGGCGaaauccuuGAGAaacuGCCg -3'
miRNA:   3'- -GCGGAaGUUgaGCAGCCGU--------CUCU----UGG- -5'
12464 5' -52.4 NC_003324.1 + 16740 0.68 0.771783
Target:  5'- uGCCUcCGACUCGa-GGCAGAGcgUg -3'
miRNA:   3'- gCGGAaGUUGAGCagCCGUCUCuuGg -5'
12464 5' -52.4 NC_003324.1 + 13214 0.68 0.801625
Target:  5'- gGUCUggaUCAGCUugcCGUCGGCGaAGAugCu -3'
miRNA:   3'- gCGGA---AGUUGA---GCAGCCGUcUCUugG- -5'
12464 5' -52.4 NC_003324.1 + 50912 0.67 0.811225
Target:  5'- cCGCCUgCAGCgauGUgGGCGuuGAACCa -3'
miRNA:   3'- -GCGGAaGUUGag-CAgCCGUcuCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 21293 0.67 0.811225
Target:  5'- uCGCCUUCGgcaGCUCGaaagccaGGCGGuuGAGCa -3'
miRNA:   3'- -GCGGAAGU---UGAGCag-----CCGUCu-CUUGg -5'
12464 5' -52.4 NC_003324.1 + 50499 0.66 0.856153
Target:  5'- aCGCCcagCGcCUUG-CGGCAGGGuucACCg -3'
miRNA:   3'- -GCGGaa-GUuGAGCaGCCGUCUCu--UGG- -5'
12464 5' -52.4 NC_003324.1 + 18486 0.66 0.895139
Target:  5'- uCGCCUUCGugUgGUUccucGCAGGGu-CCg -3'
miRNA:   3'- -GCGGAAGUugAgCAGc---CGUCUCuuGG- -5'
12464 5' -52.4 NC_003324.1 + 39489 1.12 0.001554
Target:  5'- uCGCCUUCAACUCGUCGGCAGAGAACCc -3'
miRNA:   3'- -GCGGAAGUUGAGCAGCCGUCUCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 39536 0.66 0.887861
Target:  5'- aGCCgUCGucCUCGUCGaccaCGGGGAGCg -3'
miRNA:   3'- gCGGaAGUu-GAGCAGCc---GUCUCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.