miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12464 5' -52.4 NC_003324.1 + 17418 0.66 0.86771
Target:  5'- uGCCacgUCGccCUCGUCGGUcaugacgcggagcccGGuGAACCa -3'
miRNA:   3'- gCGGa--AGUu-GAGCAGCCG---------------UCuCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 38080 0.66 0.863637
Target:  5'- gCGCCUUCuGGCgaagcgCGUCGGCGccgugcuGGuGACCg -3'
miRNA:   3'- -GCGGAAG-UUGa-----GCAGCCGU-------CUcUUGG- -5'
12464 5' -52.4 NC_003324.1 + 56212 0.67 0.829841
Target:  5'- uCGCCUaUC-GCUCGaUCGGCGGcGAcauCCu -3'
miRNA:   3'- -GCGGA-AGuUGAGC-AGCCGUCuCUu--GG- -5'
12464 5' -52.4 NC_003324.1 + 29265 0.67 0.829841
Target:  5'- uCGCCgggcUCGcGCUCGaUCGGCGGAuuGCg -3'
miRNA:   3'- -GCGGa---AGU-UGAGC-AGCCGUCUcuUGg -5'
12464 5' -52.4 NC_003324.1 + 42114 0.67 0.829841
Target:  5'- aGCgCUUCGcACUCGUCGccaaugccgccGCGGGGAucagcaacagACCa -3'
miRNA:   3'- gCG-GAAGU-UGAGCAGC-----------CGUCUCU----------UGG- -5'
12464 5' -52.4 NC_003324.1 + 41645 0.68 0.781892
Target:  5'- uCGCCcgCu-CUCGUCGGCGGcgcGAcguaGCCg -3'
miRNA:   3'- -GCGGaaGuuGAGCAGCCGUCu--CU----UGG- -5'
12464 5' -52.4 NC_003324.1 + 26354 0.69 0.708454
Target:  5'- gGCCUguuUCAGCUCGcgauaccuguUCGGCAGGu-GCUg -3'
miRNA:   3'- gCGGA---AGUUGAGC----------AGCCGUCUcuUGG- -5'
12464 5' -52.4 NC_003324.1 + 21953 0.73 0.510053
Target:  5'- gGCCU----CUCGUCGGCGGcgcgaugcaccuuGGAGCCg -3'
miRNA:   3'- gCGGAaguuGAGCAGCCGUC-------------UCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 42989 0.73 0.479841
Target:  5'- cCGCCaaaUUCAcGCggGUCGGCaacGGAGAACCg -3'
miRNA:   3'- -GCGG---AAGU-UGagCAGCCG---UCUCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 32096 0.75 0.420319
Target:  5'- gCGCC-UCGGCUCGUCGccGguGAG-GCCg -3'
miRNA:   3'- -GCGGaAGUUGAGCAGC--CguCUCuUGG- -5'
12464 5' -52.4 NC_003324.1 + 8324 0.79 0.220715
Target:  5'- aCGCCgUCGGCgcucguuacggugacCGUCGGCGGGGAGCUg -3'
miRNA:   3'- -GCGGaAGUUGa--------------GCAGCCGUCUCUUGG- -5'
12464 5' -52.4 NC_003324.1 + 18223 0.8 0.19247
Target:  5'- uCGCCUUCuuUUCGUCGGCGGucAGGuuGCCa -3'
miRNA:   3'- -GCGGAAGuuGAGCAGCCGUC--UCU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.