miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12466 5' -50.6 NC_003324.1 + 41317 1.11 0.003017
Target:  5'- uUCCAUCGCGAUCACGAUGUCGAACGGc -3'
miRNA:   3'- -AGGUAGCGCUAGUGCUACAGCUUGCC- -5'
12466 5' -50.6 NC_003324.1 + 18341 0.78 0.40149
Target:  5'- uUCCGUCaGCGGUCGCGGcucUGUCGucGAUGGc -3'
miRNA:   3'- -AGGUAG-CGCUAGUGCU---ACAGC--UUGCC- -5'
12466 5' -50.6 NC_003324.1 + 32490 0.76 0.459523
Target:  5'- gCC-UCgGCGAUCACGGUGUCG-ACGa -3'
miRNA:   3'- aGGuAG-CGCUAGUGCUACAGCuUGCc -5'
12466 5' -50.6 NC_003324.1 + 19207 0.76 0.469626
Target:  5'- cUCCAUCGCcuuGcgCACGuUGUCGAGCaGGa -3'
miRNA:   3'- -AGGUAGCG---CuaGUGCuACAGCUUG-CC- -5'
12466 5' -50.6 NC_003324.1 + 41393 0.75 0.543192
Target:  5'- -aCAUCGUGAUCGCGAUGgaaaggcCGcACGGc -3'
miRNA:   3'- agGUAGCGCUAGUGCUACa------GCuUGCC- -5'
12466 5' -50.6 NC_003324.1 + 21503 0.72 0.675599
Target:  5'- cCCGUCGCGuugcUCAag--GUCGGACGGc -3'
miRNA:   3'- aGGUAGCGCu---AGUgcuaCAGCUUGCC- -5'
12466 5' -50.6 NC_003324.1 + 2674 0.7 0.815012
Target:  5'- uUCCAgCGCGguggccgcuucggcaAgggCACGAUGUCGGcgGCGGc -3'
miRNA:   3'- -AGGUaGCGC---------------Ua--GUGCUACAGCU--UGCC- -5'
12466 5' -50.6 NC_003324.1 + 20493 0.7 0.820634
Target:  5'- aCCGcUUGCGAUCgACGAugacggcuccguUGUCGAauACGGc -3'
miRNA:   3'- aGGU-AGCGCUAG-UGCU------------ACAGCU--UGCC- -5'
12466 5' -50.6 NC_003324.1 + 35797 0.69 0.829841
Target:  5'- gCgAUgGCGAUCugGggGUUGAcCGGa -3'
miRNA:   3'- aGgUAgCGCUAGugCuaCAGCUuGCC- -5'
12466 5' -50.6 NC_003324.1 + 7386 0.69 0.829841
Target:  5'- ----aCGaCGGUCACGGUGUUGGGCuGGa -3'
miRNA:   3'- agguaGC-GCUAGUGCUACAGCUUG-CC- -5'
12466 5' -50.6 NC_003324.1 + 12888 0.69 0.838836
Target:  5'- gCCAUCGuCGAUgggCGCGGUGUUGGuCGa -3'
miRNA:   3'- aGGUAGC-GCUA---GUGCUACAGCUuGCc -5'
12466 5' -50.6 NC_003324.1 + 7849 0.69 0.861991
Target:  5'- cCCGUUGCGAUCGCGccucccugcgaggcGUGcucUCGGACa- -3'
miRNA:   3'- aGGUAGCGCUAGUGC--------------UAC---AGCUUGcc -5'
12466 5' -50.6 NC_003324.1 + 12958 0.69 0.864457
Target:  5'- cCCAUCGaCGAUgGCGAaGUCGuGAUGa -3'
miRNA:   3'- aGGUAGC-GCUAgUGCUaCAGC-UUGCc -5'
12466 5' -50.6 NC_003324.1 + 53404 0.68 0.872514
Target:  5'- -gCAUCGCGGUCACGgcGccuacuacggcUCGAACu- -3'
miRNA:   3'- agGUAGCGCUAGUGCuaC-----------AGCUUGcc -5'
12466 5' -50.6 NC_003324.1 + 24750 0.68 0.872514
Target:  5'- cCCucgaGUCGCuugcgcagGAUUACGAUGUCGGugGu -3'
miRNA:   3'- aGG----UAGCG--------CUAGUGCUACAGCUugCc -5'
12466 5' -50.6 NC_003324.1 + 48047 0.68 0.883367
Target:  5'- -gCGUCGgugcCGGUCugGAUGUCuccgcuauggaugcaGAGCGGa -3'
miRNA:   3'- agGUAGC----GCUAGugCUACAG---------------CUUGCC- -5'
12466 5' -50.6 NC_003324.1 + 37668 0.68 0.894423
Target:  5'- aCCGUCGCagaGGUCACcAUGaUCGAcgcccucACGGg -3'
miRNA:   3'- aGGUAGCG---CUAGUGcUAC-AGCU-------UGCC- -5'
12466 5' -50.6 NC_003324.1 + 29540 0.68 0.895139
Target:  5'- uUCCGUCGUGAUCucaGAUG-C--ACGGg -3'
miRNA:   3'- -AGGUAGCGCUAGug-CUACaGcuUGCC- -5'
12466 5' -50.6 NC_003324.1 + 22951 0.67 0.921506
Target:  5'- gUCCAgucUC-CGGUgGCGAUG-CGAGCGa -3'
miRNA:   3'- -AGGU---AGcGCUAgUGCUACaGCUUGCc -5'
12466 5' -50.6 NC_003324.1 + 49407 0.67 0.927398
Target:  5'- cUCgAUCGCGAUCGgCGAgccCGGcaGCGGc -3'
miRNA:   3'- -AGgUAGCGCUAGU-GCUacaGCU--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.