miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12467 5' -52.7 NC_003324.1 + 41523 1.09 0.001726
Target:  5'- cGGUACCUGCCAACAACGCGUGCCAAAc -3'
miRNA:   3'- -CCAUGGACGGUUGUUGCGCACGGUUU- -5'
12467 5' -52.7 NC_003324.1 + 30219 0.71 0.524322
Target:  5'- uGGUACCaGCCAGC-ACGC--GCCGAGc -3'
miRNA:   3'- -CCAUGGaCGGUUGuUGCGcaCGGUUU- -5'
12467 5' -52.7 NC_003324.1 + 42560 0.7 0.56845
Target:  5'- cGUGCUUGCC-GCAAUGacCGUGCCGGc -3'
miRNA:   3'- cCAUGGACGGuUGUUGC--GCACGGUUu -5'
12467 5' -52.7 NC_003324.1 + 43794 0.7 0.56845
Target:  5'- gGGUGCCgggaacGCCGGCAagGCGCGUGaaaucaCGGAu -3'
miRNA:   3'- -CCAUGGa-----CGGUUGU--UGCGCACg-----GUUU- -5'
12467 5' -52.7 NC_003324.1 + 14572 0.7 0.57964
Target:  5'- gGGUcgcgGCCUGCCGGCGcaaGCG-GCCGGc -3'
miRNA:   3'- -CCA----UGGACGGUUGUug-CGCaCGGUUu -5'
12467 5' -52.7 NC_003324.1 + 22607 0.7 0.610055
Target:  5'- uGGcUGCCUGCCGcguugccgagccccGCGACGCGcUGCaUAGAg -3'
miRNA:   3'- -CC-AUGGACGGU--------------UGUUGCGC-ACG-GUUU- -5'
12467 5' -52.7 NC_003324.1 + 12755 0.69 0.658712
Target:  5'- --aAUCgaGCCAGCGAUGCGUucGCCAGAc -3'
miRNA:   3'- ccaUGGa-CGGUUGUUGCGCA--CGGUUU- -5'
12467 5' -52.7 NC_003324.1 + 5332 0.69 0.669991
Target:  5'- --cGCCUGCCGcUggUGCGgcgGCCAAc -3'
miRNA:   3'- ccaUGGACGGUuGuuGCGCa--CGGUUu -5'
12467 5' -52.7 NC_003324.1 + 16246 0.69 0.68011
Target:  5'- cGGUGCCcgccucggUGCCAGCGaugccugGCGCG-GCCc-- -3'
miRNA:   3'- -CCAUGG--------ACGGUUGU-------UGCGCaCGGuuu -5'
12467 5' -52.7 NC_003324.1 + 21076 0.69 0.658712
Target:  5'- -cUGCCUugucgGCCGccGCGGCGCGUGCUg-- -3'
miRNA:   3'- ccAUGGA-----CGGU--UGUUGCGCACGGuuu -5'
12467 5' -52.7 NC_003324.1 + 47410 0.69 0.677865
Target:  5'- --gGCCUGCCAGgcggagcacagcuuCGACGCcUGCCAc- -3'
miRNA:   3'- ccaUGGACGGUU--------------GUUGCGcACGGUuu -5'
12467 5' -52.7 NC_003324.1 + 49341 0.68 0.736452
Target:  5'- cGUGCUgugcggcGCCAACAGCG-GUGUCGAc -3'
miRNA:   3'- cCAUGGa------CGGUUGUUGCgCACGGUUu -5'
12467 5' -52.7 NC_003324.1 + 24326 0.67 0.75785
Target:  5'- --cACCaUGCCGGCAACGCG-GUCc-- -3'
miRNA:   3'- ccaUGG-ACGGUUGUUGCGCaCGGuuu -5'
12467 5' -52.7 NC_003324.1 + 34506 0.67 0.768351
Target:  5'- uGUGCCgucgGCCGACAucAC-CGaUGCCGAGg -3'
miRNA:   3'- cCAUGGa---CGGUUGU--UGcGC-ACGGUUU- -5'
12467 5' -52.7 NC_003324.1 + 17383 0.67 0.778704
Target:  5'- cGUACCggcuugggUGCCAugAucucaagucCGCGUGCCAc- -3'
miRNA:   3'- cCAUGG--------ACGGUugUu--------GCGCACGGUuu -5'
12467 5' -52.7 NC_003324.1 + 33595 0.67 0.75785
Target:  5'- ---cCCUGCUGcuuugcGCAGCGCGuUGCCGAc -3'
miRNA:   3'- ccauGGACGGU------UGUUGCGC-ACGGUUu -5'
12467 5' -52.7 NC_003324.1 + 17789 0.67 0.747213
Target:  5'- cGGUGa-UGCCGGCGAUcugguaGCGUGCCu-- -3'
miRNA:   3'- -CCAUggACGGUUGUUG------CGCACGGuuu -5'
12467 5' -52.7 NC_003324.1 + 42175 0.66 0.818388
Target:  5'- cGUACUUGCCgAACGACGgcacUGcGCCGGAg -3'
miRNA:   3'- cCAUGGACGG-UUGUUGC----GCaCGGUUU- -5'
12467 5' -52.7 NC_003324.1 + 14500 0.66 0.827819
Target:  5'- cGGUGCa-GCCAACAcuGCGCG-GCa--- -3'
miRNA:   3'- -CCAUGgaCGGUUGU--UGCGCaCGguuu -5'
12467 5' -52.7 NC_003324.1 + 39261 0.66 0.846017
Target:  5'- cGGUugCcGCCGugGcuGCGCcagaagGUGCCGAu -3'
miRNA:   3'- -CCAugGaCGGUugU--UGCG------CACGGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.