miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
12468	5'	-51.8	NC_003324.1	+	41797	1.08	0.002482
	Target:  5'- uUACCUCGCUGGUCGAUUGAUAGAGCAa -3' miRNA:   3'- -AUGGAGCGACCAGCUAACUAUCUCGU- -5'
12468	5'	-51.8	NC_003324.1	+	6067	0.76	0.346103
	Target:  5'- cUGCCaUCGCUGGUCGAgaucgccgAGGGCAa -3' miRNA:   3'- -AUGG-AGCGACCAGCUaacua---UCUCGU- -5'
12468	5'	-51.8	NC_003324.1	+	56482	0.71	0.616062
	Target:  5'- aGCCUUGUcGGUCGAUUGGUcaaacgaggauGAGCGc -3' miRNA:   3'- aUGGAGCGaCCAGCUAACUAu----------CUCGU- -5'
12468	5'	-51.8	NC_003324.1	+	35926	0.71	0.604674
	Target:  5'- cGCCaggCGCaGGUCGAaucccUGAUGGAGCu -3' miRNA:   3'- aUGGa--GCGaCCAGCUa----ACUAUCUCGu -5'
12468	5'	-51.8	NC_003324.1	+	41030	0.69	0.728909
	Target:  5'- cGCCUCGCUGuUCGAgugUGAgccGGCGa -3' miRNA:   3'- aUGGAGCGACcAGCUa--ACUaucUCGU- -5'
12468	5'	-51.8	NC_003324.1	+	25841	0.68	0.761303
	Target:  5'- -uCCUCaaGCUGGaugcggCGcgUGGUGGAGCGa -3' miRNA:   3'- auGGAG--CGACCa-----GCuaACUAUCUCGU- -5'
12468	5'	-51.8	NC_003324.1	+	44163	0.66	0.869978
	Target:  5'- gAUCUCGCUGcgcaagcaggacaccGaCGAgcgGAUGGAGCAa -3' miRNA:   3'- aUGGAGCGAC---------------CaGCUaa-CUAUCUCGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home