miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12469 5' -52.7 NC_003324.1 + 1888 0.67 0.841123
Target:  5'- cCGU--UCGUGCUU-CCGAACGguaGGCa -3'
miRNA:   3'- -GCGcuAGCAUGAAcGGCUUGCug-CCG- -5'
12469 5' -52.7 NC_003324.1 + 2679 0.66 0.884908
Target:  5'- gCGCGGUgGccGCUucggcaagggcacgaUGUCG-GCGGCGGCa -3'
miRNA:   3'- -GCGCUAgCa-UGA---------------ACGGCuUGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 2772 0.7 0.691085
Target:  5'- cCGcCGAcaUCGUGCccUUGCCGAA--GCGGCc -3'
miRNA:   3'- -GC-GCU--AGCAUG--AACGGCUUgcUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 5349 0.66 0.874239
Target:  5'- aGCGAgaUCGaggauaucGCcUGCCGcugguGCGGCGGCc -3'
miRNA:   3'- gCGCU--AGCa-------UGaACGGCu----UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 7417 0.67 0.823216
Target:  5'- cCGC-AUCGUcaGCgUGCCcucggcgcgcgGAACGACGGUc -3'
miRNA:   3'- -GCGcUAGCA--UGaACGG-----------CUUGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 7778 0.7 0.669283
Target:  5'- gCGCGAUCGcaacggGCuUUGCCGccgcGGCGAacaaGGCu -3'
miRNA:   3'- -GCGCUAGCa-----UG-AACGGC----UUGCUg---CCG- -5'
12469 5' -52.7 NC_003324.1 + 11072 0.72 0.581495
Target:  5'- gCGUGGUUGUcuACgagcagGCCGAcauaaACGACGGUg -3'
miRNA:   3'- -GCGCUAGCA--UGaa----CGGCU-----UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 11348 0.66 0.855657
Target:  5'- aCGCGGUCGcUGauguugucaaucagUUUGCCGca-GAUGGCu -3'
miRNA:   3'- -GCGCUAGC-AU--------------GAACGGCuugCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 11567 0.66 0.894361
Target:  5'- gGCGAgcagcCGaUGCUgcucccgcggcuccUGCCGGagacugguGCGACGGCn -3'
miRNA:   3'- gCGCUa----GC-AUGA--------------ACGGCU--------UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 11620 0.75 0.40781
Target:  5'- aGCGAUgaaCGUGC--GCuUGAACGACGGCg -3'
miRNA:   3'- gCGCUA---GCAUGaaCG-GCUUGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 11836 0.68 0.794876
Target:  5'- gCGCGAcCGg----GCCGGGC-ACGGCa -3'
miRNA:   3'- -GCGCUaGCaugaaCGGCUUGcUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 12218 0.67 0.841123
Target:  5'- uCGCGGgucUCGcagAgaUGCCGAaugguaugAUGGCGGCg -3'
miRNA:   3'- -GCGCU---AGCa--UgaACGGCU--------UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 12451 0.68 0.784087
Target:  5'- uGCccuUCGUcACUaccacgagaaugcUGCCGAGCG-CGGCa -3'
miRNA:   3'- gCGcu-AGCA-UGA-------------ACGGCUUGCuGCCG- -5'
12469 5' -52.7 NC_003324.1 + 13174 0.68 0.785076
Target:  5'- aGCGAggcugCGUcgGCggcgGUCG-GCGGCGGCg -3'
miRNA:   3'- gCGCUa----GCA--UGaa--CGGCuUGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 13305 0.66 0.887128
Target:  5'- -aCGAUCGggac-GCCGAAaagcuugaggugcuCGACGGCa -3'
miRNA:   3'- gcGCUAGCaugaaCGGCUU--------------GCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 15407 0.67 0.823216
Target:  5'- gGCGuUCGUagcGCUUGuuGAGCaGAuUGGCu -3'
miRNA:   3'- gCGCuAGCA---UGAACggCUUG-CU-GCCG- -5'
12469 5' -52.7 NC_003324.1 + 17168 0.66 0.896479
Target:  5'- aGCGAUUGacgaggcGCUggcgcgucUGUCGGACG-CGGCu -3'
miRNA:   3'- gCGCUAGCa------UGA--------ACGGCUUGCuGCCG- -5'
12469 5' -52.7 NC_003324.1 + 17545 0.69 0.748561
Target:  5'- gGCGAUCGgaaccaaagguccgGCaUGCCGAugcGCGACGa- -3'
miRNA:   3'- gCGCUAGCa-------------UGaACGGCU---UGCUGCcg -5'
12469 5' -52.7 NC_003324.1 + 17799 0.66 0.866318
Target:  5'- gGCGAUCugGUAgcgUGCCucACGGCGcGCa -3'
miRNA:   3'- gCGCUAG--CAUga-ACGGcuUGCUGC-CG- -5'
12469 5' -52.7 NC_003324.1 + 18334 0.74 0.475821
Target:  5'- aGCGGUCGcgGCUcUGUCGu-CGAUGGCa -3'
miRNA:   3'- gCGCUAGCa-UGA-ACGGCuuGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.