miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12469 5' -52.7 NC_003324.1 + 49972 0.66 0.858153
Target:  5'- gGCGAUCGgcGC-UGCCcuGAUGGgGGCa -3'
miRNA:   3'- gCGCUAGCa-UGaACGGc-UUGCUgCCG- -5'
12469 5' -52.7 NC_003324.1 + 35001 0.68 0.785076
Target:  5'- aGCGuuugCGUuuGC-UGCCGcagcagcagcAGCGGCGGCg -3'
miRNA:   3'- gCGCua--GCA--UGaACGGC----------UUGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 29895 0.68 0.794876
Target:  5'- gCGCGAucuUCGgcgcGCUgcuggccaUGCUGGACGgcGCGGCc -3'
miRNA:   3'- -GCGCU---AGCa---UGA--------ACGGCUUGC--UGCCG- -5'
12469 5' -52.7 NC_003324.1 + 35590 0.67 0.823216
Target:  5'- uGCGcAUCGgcuuccuuCUUGCCGA-UGuCGGCu -3'
miRNA:   3'- gCGC-UAGCau------GAACGGCUuGCuGCCG- -5'
12469 5' -52.7 NC_003324.1 + 55045 0.67 0.823216
Target:  5'- gGCGGaCGgcuggGC-UGCC--GCGACGGCg -3'
miRNA:   3'- gCGCUaGCa----UGaACGGcuUGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 12218 0.67 0.841123
Target:  5'- uCGCGGgucUCGcagAgaUGCCGAaugguaugAUGGCGGCg -3'
miRNA:   3'- -GCGCU---AGCa--UgaACGGCU--------UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 1888 0.67 0.841123
Target:  5'- cCGU--UCGUGCUU-CCGAACGguaGGCa -3'
miRNA:   3'- -GCGcuAGCAUGAAcGGCUUGCug-CCG- -5'
12469 5' -52.7 NC_003324.1 + 19547 0.67 0.849752
Target:  5'- aCGCGcAUa-UACUcGCCGA-CGGCGGUc -3'
miRNA:   3'- -GCGC-UAgcAUGAaCGGCUuGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 11348 0.66 0.855657
Target:  5'- aCGCGGUCGcUGauguugucaaucagUUUGCCGca-GAUGGCu -3'
miRNA:   3'- -GCGCUAGC-AU--------------GAACGGCuugCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 50261 0.68 0.763992
Target:  5'- cCGCG-UCGagaaagagaaugaUGCgccGCCGGuCGACGGCa -3'
miRNA:   3'- -GCGCuAGC-------------AUGaa-CGGCUuGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 24999 0.69 0.754767
Target:  5'- gGCGcugcuuGUCGUAgagcCUUuccgaGCCGAACGGCGGg -3'
miRNA:   3'- gCGC------UAGCAU----GAA-----CGGCUUGCUGCCg -5'
12469 5' -52.7 NC_003324.1 + 17545 0.69 0.748561
Target:  5'- gGCGAUCGgaaccaaagguccgGCaUGCCGAugcGCGACGa- -3'
miRNA:   3'- gCGCUAGCa-------------UGaACGGCU---UGCUGCcg -5'
12469 5' -52.7 NC_003324.1 + 21192 0.84 0.110207
Target:  5'- uCGCGAUCGUgcucaaccgccugGCUuucgagcUGCCGAagGCGACGGCg -3'
miRNA:   3'- -GCGCUAGCA-------------UGA-------ACGGCU--UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 31039 0.76 0.354592
Target:  5'- gCGCGGUCGgcguucaACUccUGCUGAcgcgcuGCGACGGCc -3'
miRNA:   3'- -GCGCUAGCa------UGA--ACGGCU------UGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 11620 0.75 0.40781
Target:  5'- aGCGAUgaaCGUGC--GCuUGAACGACGGCg -3'
miRNA:   3'- gCGCUA---GCAUGaaCG-GCUUGCUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 42553 0.74 0.445949
Target:  5'- uGCcaGUCGUGCUUGCCGcAAUGAccgugcCGGCa -3'
miRNA:   3'- gCGc-UAGCAUGAACGGC-UUGCU------GCCG- -5'
12469 5' -52.7 NC_003324.1 + 46042 0.73 0.485999
Target:  5'- gGCuGAUCGUcgaaggccACUUGCCGAgAUGAgCGGCc -3'
miRNA:   3'- gCG-CUAGCA--------UGAACGGCU-UGCU-GCCG- -5'
12469 5' -52.7 NC_003324.1 + 22241 0.73 0.517124
Target:  5'- aGCGGcaaCGU-CUUGCCGAucGCGGCGaGCu -3'
miRNA:   3'- gCGCUa--GCAuGAACGGCU--UGCUGC-CG- -5'
12469 5' -52.7 NC_003324.1 + 49412 0.71 0.603371
Target:  5'- uCGCGAUCG-GCgaGCCcGGCaGCGGCg -3'
miRNA:   3'- -GCGCUAGCaUGaaCGGcUUGcUGCCG- -5'
12469 5' -52.7 NC_003324.1 + 7778 0.7 0.669283
Target:  5'- gCGCGAUCGcaacggGCuUUGCCGccgcGGCGAacaaGGCu -3'
miRNA:   3'- -GCGCUAGCa-----UG-AACGGC----UUGCUg---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.