miRNA: 3'- -GUUGUCGUu------CCGguA--AGC----GGCCCGGU- -5'
miRNA: 3'- gUUGuCGUUCCGGuaa---GCGGCCCGgu -5'
miRNA: 3'- gUUGUCGUUC-CGgUaa-GCGGC---CCGGU- -5'
miRNA: 3'- gUUGUcGUUCCGGuaag-CGGCCCGGu -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12472 | 3' | -57.4 | NC_003324.1 | + | 4693 | 0.66 | 0.600209 |
|
Target: 5'- uCAGCGGCAucauguuGGCguUcuUCGgaucCCGGGCCGa -3' miRNA: 3'- -GUUGUCGUu------CCGguA--AGC----GGCCCGGU- -5' |
|||||||
| 12472 | 3' | -57.4 | NC_003324.1 | + | 3321 | 0.67 | 0.535419 |
|
Target: 5'- gGAUuGCAGGGCUuagucgCGCUGGGCg- -3' miRNA: 3'- gUUGuCGUUCCGGuaa---GCGGCCCGgu -5' |
|||||||
| 12472 | 3' | -57.4 | NC_003324.1 | + | 3162 | 0.66 | 0.589294 |
|
Target: 5'- gAAUGGCAAGaGCgGgagCGCCGugcGGCCAu -3' miRNA: 3'- gUUGUCGUUC-CGgUaa-GCGGC---CCGGU- -5' |
|||||||
| 12472 | 3' | -57.4 | NC_003324.1 | + | 614 | 0.68 | 0.473251 |
|
Target: 5'- gGACAuCAAGGCCuggcaGCUGGGCUu -3' miRNA: 3'- gUUGUcGUUCCGGuaag-CGGCCCGGu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home