miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12473 3' -53.6 NC_003324.1 + 34982 0.66 0.864321
Target:  5'- aCGuGGAUcCUGcCGGCCGAcaucAACGACa -3'
miRNA:   3'- cGCuCCUA-GAC-GCUGGCUc---UUGCUGg -5'
12473 3' -53.6 NC_003324.1 + 14221 0.66 0.864321
Target:  5'- gGCGAcGGAUCagGCaaguugggcgaaGGCUGAccGCGACCg -3'
miRNA:   3'- -CGCU-CCUAGa-CG------------CUGGCUcuUGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 43000 0.66 0.864321
Target:  5'- aCGcGGGUCgGCaACgGAGAAcCGGCCg -3'
miRNA:   3'- cGCuCCUAGaCGcUGgCUCUU-GCUGG- -5'
12473 3' -53.6 NC_003324.1 + 41674 0.66 0.839161
Target:  5'- cGCaGAGGggCUuuccCGAgCGAgGGACGGCCa -3'
miRNA:   3'- -CG-CUCCuaGAc---GCUgGCU-CUUGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 2183 0.66 0.830334
Target:  5'- aGCGcAGGAgCUGCucacggGGCCGAGGAaaaACCu -3'
miRNA:   3'- -CGC-UCCUaGACG------CUGGCUCUUgc-UGG- -5'
12473 3' -53.6 NC_003324.1 + 24134 0.66 0.830334
Target:  5'- cGCGcuGAUCUGCGGCCaAGucgGAUCa -3'
miRNA:   3'- -CGCucCUAGACGCUGGcUCuugCUGG- -5'
12473 3' -53.6 NC_003324.1 + 1771 0.66 0.830334
Target:  5'- gGCGuGGAgaUCaGCGugCcAGGACGAaCCg -3'
miRNA:   3'- -CGCuCCU--AGaCGCugGcUCUUGCU-GG- -5'
12473 3' -53.6 NC_003324.1 + 3152 0.66 0.821303
Target:  5'- aGCGGGaGcgCcgUGCGGCCauuGAGAGaGACCg -3'
miRNA:   3'- -CGCUC-CuaG--ACGCUGG---CUCUUgCUGG- -5'
12473 3' -53.6 NC_003324.1 + 42142 0.66 0.821303
Target:  5'- cGCGGGGAUCaGCaacaGACCauGGGccGCGAUCg -3'
miRNA:   3'- -CGCUCCUAGaCG----CUGG--CUCu-UGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 44803 0.66 0.820389
Target:  5'- aCGAGGAUgCUGCuGCgGGGAgaaggggGCGGCg -3'
miRNA:   3'- cGCUCCUA-GACGcUGgCUCU-------UGCUGg -5'
12473 3' -53.6 NC_003324.1 + 49367 0.67 0.812076
Target:  5'- uCGAcGAUCUggGCGACCucGAaaGCGACCc -3'
miRNA:   3'- cGCUcCUAGA--CGCUGGcuCU--UGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 2844 0.67 0.812076
Target:  5'- gGCGAGGGggagCgucaaCGGCCGAGAgguGCGAg- -3'
miRNA:   3'- -CGCUCCUa---Gac---GCUGGCUCU---UGCUgg -5'
12473 3' -53.6 NC_003324.1 + 5390 0.67 0.812076
Target:  5'- uCGAGGAUCaUGUcgauGACgCGGGuucCGGCCg -3'
miRNA:   3'- cGCUCCUAG-ACG----CUG-GCUCuu-GCUGG- -5'
12473 3' -53.6 NC_003324.1 + 57386 0.67 0.812076
Target:  5'- -gGAGGGcUCgGCGGaggCGAGGGCGGCa -3'
miRNA:   3'- cgCUCCU-AGaCGCUg--GCUCUUGCUGg -5'
12473 3' -53.6 NC_003324.1 + 13174 0.67 0.802664
Target:  5'- aGCGAGGcugcGUCgGCGGCgGucGGCGGCg -3'
miRNA:   3'- -CGCUCC----UAGaCGCUGgCucUUGCUGg -5'
12473 3' -53.6 NC_003324.1 + 39970 0.67 0.783322
Target:  5'- cGUGAGGcgCUGgaGAUCGgcaaGGAAgCGGCCg -3'
miRNA:   3'- -CGCUCCuaGACg-CUGGC----UCUU-GCUGG- -5'
12473 3' -53.6 NC_003324.1 + 15258 0.67 0.783322
Target:  5'- gGCGGGuuuGAUCUGCGgaACCGGcGAugGAg- -3'
miRNA:   3'- -CGCUC---CUAGACGC--UGGCU-CUugCUgg -5'
12473 3' -53.6 NC_003324.1 + 31622 0.67 0.773415
Target:  5'- cGCGGGcGcgCgugGCGGCCauucucacgacGAGGACGGCg -3'
miRNA:   3'- -CGCUC-CuaGa--CGCUGG-----------CUCUUGCUGg -5'
12473 3' -53.6 NC_003324.1 + 43364 0.68 0.767401
Target:  5'- uGCGAGGcGUCgGCGAaauccUUGAGAaacugccgcugccagGCGACCc -3'
miRNA:   3'- -CGCUCC-UAGaCGCU-----GGCUCU---------------UGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 37634 0.68 0.75318
Target:  5'- aGgGGGGAUCgacaggagGUcGCCGAGGugGuCCg -3'
miRNA:   3'- -CgCUCCUAGa-------CGcUGGCUCUugCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.