miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12473 5' -57.4 NC_003324.1 + 5316 0.68 0.515791
Target:  5'- gGCGGCCAacugaUGcucgaaccggauuGCGGUCGCcGCGCCa- -3'
miRNA:   3'- -CGCUGGUa----AC-------------CGCCAGUGaCGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 8086 0.7 0.419363
Target:  5'- gGUGACCA-UGGCugccacGGUCGCcguUGCGCCu- -3'
miRNA:   3'- -CGCUGGUaACCG------CCAGUG---ACGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 8344 0.75 0.203056
Target:  5'- gGUGACCGUcGGCGGggaGCUGCGUCu- -3'
miRNA:   3'- -CGCUGGUAaCCGCCag-UGACGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 11471 0.66 0.643536
Target:  5'- aGgGGCaCAUU-GCGGUCAagaGCGCCGu -3'
miRNA:   3'- -CgCUG-GUAAcCGCCAGUga-CGCGGCc -5'
12473 5' -57.4 NC_003324.1 + 14593 0.72 0.310872
Target:  5'- aGCGGCCGgcggcgcaGGCGGUaGCgugGCGgCCGGa -3'
miRNA:   3'- -CGCUGGUaa------CCGCCAgUGa--CGC-GGCC- -5'
12473 5' -57.4 NC_003324.1 + 17357 0.71 0.374986
Target:  5'- aGCGugCAUgacGUGGUCGCacagGCGCuCGGc -3'
miRNA:   3'- -CGCugGUAac-CGCCAGUGa---CGCG-GCC- -5'
12473 5' -57.4 NC_003324.1 + 18400 0.66 0.609278
Target:  5'- gGCGcCCGcuUUGGCGGUCucaccaagGCCGGg -3'
miRNA:   3'- -CGCuGGU--AACCGCCAGugacg---CGGCC- -5'
12473 5' -57.4 NC_003324.1 + 18491 0.73 0.255442
Target:  5'- uGCGAgcUCGUUGGCGagcGUCACgGCGCgGGu -3'
miRNA:   3'- -CGCU--GGUAACCGC---CAGUGaCGCGgCC- -5'
12473 5' -57.4 NC_003324.1 + 20284 0.67 0.54785
Target:  5'- cCGGCCAUaccgGGCGcGUUACgcGCGCCu- -3'
miRNA:   3'- cGCUGGUAa---CCGC-CAGUGa-CGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 21084 0.67 0.558329
Target:  5'- uCGGCCGccgcGGCGcGU-GCUGCGUCGGc -3'
miRNA:   3'- cGCUGGUaa--CCGC-CAgUGACGCGGCC- -5'
12473 5' -57.4 NC_003324.1 + 24387 0.66 0.617836
Target:  5'- gGCuGGCCGagaUGGuCGGgcaugcggauaugCACUGCGCCGu -3'
miRNA:   3'- -CG-CUGGUa--ACC-GCCa------------GUGACGCGGCc -5'
12473 5' -57.4 NC_003324.1 + 26026 0.66 0.643536
Target:  5'- aGCGcGCCAaUGGC-GUCACcgGUcuGCCGGc -3'
miRNA:   3'- -CGC-UGGUaACCGcCAGUGa-CG--CGGCC- -5'
12473 5' -57.4 NC_003324.1 + 26162 0.67 0.600732
Target:  5'- gGCGGCCugcaucauucuGUcGGCGGUCucgcugcgggGCUGCGUCu- -3'
miRNA:   3'- -CGCUGG-----------UAaCCGCCAG----------UGACGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 27186 0.68 0.537434
Target:  5'- aGCGACCGcgcUGGUGu--GCUGCGCCa- -3'
miRNA:   3'- -CGCUGGUa--ACCGCcagUGACGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 28583 0.68 0.534322
Target:  5'- -aGACCGUuuUGGCGGUucgcggcuuccgccCGCUGuCGCCc- -3'
miRNA:   3'- cgCUGGUA--ACCGCCA--------------GUGAC-GCGGcc -5'
12473 5' -57.4 NC_003324.1 + 28959 0.72 0.296204
Target:  5'- cCGGCCAgUGGUGGgacguugagcUCACUGCuCCGGc -3'
miRNA:   3'- cGCUGGUaACCGCC----------AGUGACGcGGCC- -5'
12473 5' -57.4 NC_003324.1 + 30517 0.7 0.392352
Target:  5'- uGCGACCG-UGGCGaccuUCGCUGcCGCUGc -3'
miRNA:   3'- -CGCUGGUaACCGCc---AGUGAC-GCGGCc -5'
12473 5' -57.4 NC_003324.1 + 30754 0.67 0.600732
Target:  5'- aGUGACgGaagcacggGcGCGGUC-CUGCGCCGu -3'
miRNA:   3'- -CGCUGgUaa------C-CGCCAGuGACGCGGCc -5'
12473 5' -57.4 NC_003324.1 + 31317 0.74 0.242915
Target:  5'- uGCGGCC---GGCGG-CGCUgGCGCUGGc -3'
miRNA:   3'- -CGCUGGuaaCCGCCaGUGA-CGCGGCC- -5'
12473 5' -57.4 NC_003324.1 + 31609 0.67 0.586882
Target:  5'- gGCGGCCAUUcucacgacgaggacGGCGG--ACUGCGaCCa- -3'
miRNA:   3'- -CGCUGGUAA--------------CCGCCagUGACGC-GGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.