miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12473 5' -57.4 NC_003324.1 + 37994 0.78 0.122374
Target:  5'- gGCGGCCAUgccgGaGCGGUUGCgGCGCaCGGg -3'
miRNA:   3'- -CGCUGGUAa---C-CGCCAGUGaCGCG-GCC- -5'
12473 5' -57.4 NC_003324.1 + 24387 0.66 0.617836
Target:  5'- gGCuGGCCGagaUGGuCGGgcaugcggauaugCACUGCGCCGu -3'
miRNA:   3'- -CG-CUGGUa--ACC-GCCa------------GUGACGCGGCc -5'
12473 5' -57.4 NC_003324.1 + 26162 0.67 0.600732
Target:  5'- gGCGGCCugcaucauucuGUcGGCGGUCucgcugcgggGCUGCGUCu- -3'
miRNA:   3'- -CGCUGG-----------UAaCCGCCAG----------UGACGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 46645 0.67 0.600732
Target:  5'- cUGACCAUaGGUGG-CAagguCUGCGUgGGa -3'
miRNA:   3'- cGCUGGUAaCCGCCaGU----GACGCGgCC- -5'
12473 5' -57.4 NC_003324.1 + 30754 0.67 0.600732
Target:  5'- aGUGACgGaagcacggGcGCGGUC-CUGCGCCGu -3'
miRNA:   3'- -CGCUGgUaa------C-CGCCAGuGACGCGGCc -5'
12473 5' -57.4 NC_003324.1 + 53385 0.67 0.579449
Target:  5'- aGCaGACCuuuUUGaucuggcaucGCGGUCACgGCGCCu- -3'
miRNA:   3'- -CG-CUGGu--AAC----------CGCCAGUGaCGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 35305 0.67 0.568865
Target:  5'- cCGAUCGcgccGGCGG--AUUGCGCCGGc -3'
miRNA:   3'- cGCUGGUaa--CCGCCagUGACGCGGCC- -5'
12473 5' -57.4 NC_003324.1 + 21084 0.67 0.558329
Target:  5'- uCGGCCGccgcGGCGcGU-GCUGCGUCGGc -3'
miRNA:   3'- cGCUGGUaa--CCGC-CAgUGACGCGGCC- -5'
12473 5' -57.4 NC_003324.1 + 43593 0.67 0.546806
Target:  5'- -gGGCCugauacUUGGCGGUCgcgcucgACUGCucggacagcaaGCCGGa -3'
miRNA:   3'- cgCUGGu-----AACCGCCAG-------UGACG-----------CGGCC- -5'
12473 5' -57.4 NC_003324.1 + 28583 0.68 0.534322
Target:  5'- -aGACCGUuuUGGCGGUucgcggcuuccgccCGCUGuCGCCc- -3'
miRNA:   3'- cgCUGGUA--ACCGCCA--------------GUGAC-GCGGcc -5'
12473 5' -57.4 NC_003324.1 + 49877 0.68 0.505609
Target:  5'- aGUGAgCc--GGCGGgcaaagaUCGCUGCGUCGGc -3'
miRNA:   3'- -CGCUgGuaaCCGCC-------AGUGACGCGGCC- -5'
12473 5' -57.4 NC_003324.1 + 54039 0.69 0.44747
Target:  5'- -gGACgAUUGGCGcGcagaggcuuUCGCUGCGgCGGa -3'
miRNA:   3'- cgCUGgUAACCGC-C---------AGUGACGCgGCC- -5'
12473 5' -57.4 NC_003324.1 + 44830 0.7 0.428613
Target:  5'- gGCGGCguCAUUGGCGuGccCGCUGCuGCCGu -3'
miRNA:   3'- -CGCUG--GUAACCGC-Ca-GUGACG-CGGCc -5'
12473 5' -57.4 NC_003324.1 + 8086 0.7 0.419363
Target:  5'- gGUGACCA-UGGCugccacGGUCGCcguUGCGCCu- -3'
miRNA:   3'- -CGCUGGUaACCG------CCAGUG---ACGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 30517 0.7 0.392352
Target:  5'- uGCGACCG-UGGCGaccuUCGCUGcCGCUGc -3'
miRNA:   3'- -CGCUGGUaACCGCc---AGUGAC-GCGGCc -5'
12473 5' -57.4 NC_003324.1 + 14593 0.72 0.310872
Target:  5'- aGCGGCCGgcggcgcaGGCGGUaGCgugGCGgCCGGa -3'
miRNA:   3'- -CGCUGGUaa------CCGCCAgUGa--CGC-GGCC- -5'
12473 5' -57.4 NC_003324.1 + 42169 0.72 0.30347
Target:  5'- cGCGAUCGUacuUGccgaacgaCGG-CACUGCGCCGGa -3'
miRNA:   3'- -CGCUGGUA---ACc-------GCCaGUGACGCGGCC- -5'
12473 5' -57.4 NC_003324.1 + 18491 0.73 0.255442
Target:  5'- uGCGAgcUCGUUGGCGagcGUCACgGCGCgGGu -3'
miRNA:   3'- -CGCU--GGUAACCGC---CAGUGaCGCGgCC- -5'
12473 5' -57.4 NC_003324.1 + 8344 0.75 0.203056
Target:  5'- gGUGACCGUcGGCGGggaGCUGCGUCu- -3'
miRNA:   3'- -CGCUGGUAaCCGCCag-UGACGCGGcc -5'
12473 5' -57.4 NC_003324.1 + 42918 1.11 0.000548
Target:  5'- gGCGACCAUUGGCGGUCACUGCGCCGGc -3'
miRNA:   3'- -CGCUGGUAACCGCCAGUGACGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.