miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12479 3' -58.2 NC_003324.1 + 282 0.66 0.58246
Target:  5'- uGCUGCUgugaccacUCAcaGGAGAGCGCUaugGCGCg -3'
miRNA:   3'- gUGGCGG--------AGUagCUUCUCGCGG---CGCG- -5'
12479 3' -58.2 NC_003324.1 + 1421 0.71 0.290451
Target:  5'- -uUCGCCUCGUCGAGcAGCG-CGaCGCa -3'
miRNA:   3'- guGGCGGAGUAGCUUcUCGCgGC-GCG- -5'
12479 3' -58.2 NC_003324.1 + 1631 0.8 0.081024
Target:  5'- gCGCCcuuuCUUCAUCGggGccauAGCGCCGCGCa -3'
miRNA:   3'- -GUGGc---GGAGUAGCuuC----UCGCGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 3170 0.74 0.209237
Target:  5'- -uUCGCCUCGaauggcaaGAgcgGGAGCGCCGUGCg -3'
miRNA:   3'- guGGCGGAGUag------CU---UCUCGCGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 5533 0.69 0.376916
Target:  5'- aCGCCGCCUgccuacccagCGUCGAugcGGAgaagaacucgGCGCCGCa- -3'
miRNA:   3'- -GUGGCGGA----------GUAGCU---UCU----------CGCGGCGcg -5'
12479 3' -58.2 NC_003324.1 + 6255 0.66 0.571834
Target:  5'- gGCUGCCUCucgcauGUCGucGGGCagcgcauuccagGCgGCGCg -3'
miRNA:   3'- gUGGCGGAG------UAGCuuCUCG------------CGgCGCG- -5'
12479 3' -58.2 NC_003324.1 + 8147 0.7 0.327703
Target:  5'- uCACCuCCUCGacgaaguugcccUCGuuGAGCGCCaGUGCg -3'
miRNA:   3'- -GUGGcGGAGU------------AGCuuCUCGCGG-CGCG- -5'
12479 3' -58.2 NC_003324.1 + 12885 0.72 0.269737
Target:  5'- -uUCGCCaUCGUCGAuGGGCGCgGUGUu -3'
miRNA:   3'- guGGCGG-AGUAGCUuCUCGCGgCGCG- -5'
12479 3' -58.2 NC_003324.1 + 14602 0.75 0.178837
Target:  5'- cCAgCGCCUUGUCGcGGAcGCccuGCCGCGCa -3'
miRNA:   3'- -GUgGCGGAGUAGCuUCU-CG---CGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 15738 0.68 0.440294
Target:  5'- gAUCGCgUCAUCG-AGcGCGCCGgGg -3'
miRNA:   3'- gUGGCGgAGUAGCuUCuCGCGGCgCg -5'
12479 3' -58.2 NC_003324.1 + 17030 0.67 0.540266
Target:  5'- -cCCGCgUC-UUGAucGAGCGCUGCaGCg -3'
miRNA:   3'- guGGCGgAGuAGCUu-CUCGCGGCG-CG- -5'
12479 3' -58.2 NC_003324.1 + 17264 0.67 0.540266
Target:  5'- aGCCGCgUC--CGAcAGAcGCGCCaGCGCc -3'
miRNA:   3'- gUGGCGgAGuaGCU-UCU-CGCGG-CGCG- -5'
12479 3' -58.2 NC_003324.1 + 18489 0.66 0.571834
Target:  5'- cUugCGagCUCGUUGgcGAGCGUCacgGCGCg -3'
miRNA:   3'- -GugGCg-GAGUAGCuuCUCGCGG---CGCG- -5'
12479 3' -58.2 NC_003324.1 + 20688 0.66 0.58246
Target:  5'- aGCCGUCUCuUCGAGcucCGuuGCGCc -3'
miRNA:   3'- gUGGCGGAGuAGCUUcucGCggCGCG- -5'
12479 3' -58.2 NC_003324.1 + 20735 0.68 0.469252
Target:  5'- uCGCCGCCUgGUCGAAGcacucCGCC-CGa -3'
miRNA:   3'- -GUGGCGGAgUAGCUUCuc---GCGGcGCg -5'
12479 3' -58.2 NC_003324.1 + 20783 0.66 0.561255
Target:  5'- cCACCGCCggaaCGUUGgcGAG-GCgGCGg -3'
miRNA:   3'- -GUGGCGGa---GUAGCuuCUCgCGgCGCg -5'
12479 3' -58.2 NC_003324.1 + 20829 0.69 0.41238
Target:  5'- gCAUgGCCgaCAUCGAgaAGcaGGCGCCuGCGCu -3'
miRNA:   3'- -GUGgCGGa-GUAGCU--UC--UCGCGG-CGCG- -5'
12479 3' -58.2 NC_003324.1 + 21073 0.7 0.368376
Target:  5'- aCGCUGCCUUGUCGGccgcCGCgGCGCg -3'
miRNA:   3'- -GUGGCGGAGUAGCUucucGCGgCGCG- -5'
12479 3' -58.2 NC_003324.1 + 21144 0.66 0.593124
Target:  5'- -uCgGCCUCGUCaguGAGCGagcgggCGCGCg -3'
miRNA:   3'- guGgCGGAGUAGcuuCUCGCg-----GCGCG- -5'
12479 3' -58.2 NC_003324.1 + 21627 0.73 0.232494
Target:  5'- aACCGCCUCGUCGcgcugcaucacaucGAuGCGCCGUGg -3'
miRNA:   3'- gUGGCGGAGUAGCuu------------CU-CGCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.