miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12479 3' -58.2 NC_003324.1 + 52749 0.68 0.459489
Target:  5'- aACCGCCUUGgugccCGuGGGGCaCUGCGCu -3'
miRNA:   3'- gUGGCGGAGUa----GCuUCUCGcGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 45917 0.7 0.343564
Target:  5'- cCGCCGCUUCGgaagCGAAGcaAGCGaCGcCGCa -3'
miRNA:   3'- -GUGGCGGAGUa---GCUUC--UCGCgGC-GCG- -5'
12479 3' -58.2 NC_003324.1 + 21073 0.7 0.368376
Target:  5'- aCGCUGCCUUGUCGGccgcCGCgGCGCg -3'
miRNA:   3'- -GUGGCGGAGUAGCUucucGCGgCGCG- -5'
12479 3' -58.2 NC_003324.1 + 50909 0.69 0.376916
Target:  5'- aGCCGacuuCCUCGUUGAcGAGCGCCcCGg -3'
miRNA:   3'- gUGGC----GGAGUAGCUuCUCGCGGcGCg -5'
12479 3' -58.2 NC_003324.1 + 53652 0.69 0.385587
Target:  5'- cUACCGCCgug-CGGcaccuuGGAGCGCCGaGCu -3'
miRNA:   3'- -GUGGCGGaguaGCU------UCUCGCGGCgCG- -5'
12479 3' -58.2 NC_003324.1 + 37155 0.69 0.385587
Target:  5'- cCGCCGgCUUGUCGucuuccuuGCGCCGCGg -3'
miRNA:   3'- -GUGGCgGAGUAGCuucu----CGCGGCGCg -5'
12479 3' -58.2 NC_003324.1 + 44013 0.69 0.403322
Target:  5'- uGCCGCCgggaUCAU-GccGAGCGCUGCGa -3'
miRNA:   3'- gUGGCGG----AGUAgCuuCUCGCGGCGCg -5'
12479 3' -58.2 NC_003324.1 + 28644 0.69 0.421564
Target:  5'- gGCCGCCUUGUCGc---GCGUCGUGg -3'
miRNA:   3'- gUGGCGGAGUAGCuucuCGCGGCGCg -5'
12479 3' -58.2 NC_003324.1 + 41648 0.68 0.43087
Target:  5'- -cCCGCuCUCGUCGgcG-GCGCgacguagccgaCGCGCa -3'
miRNA:   3'- guGGCG-GAGUAGCuuCuCGCG-----------GCGCG- -5'
12479 3' -58.2 NC_003324.1 + 25412 0.7 0.335565
Target:  5'- cUACCGuCCUCGcgguaGAAG-GCGuuGCGCa -3'
miRNA:   3'- -GUGGC-GGAGUag---CUUCuCGCggCGCG- -5'
12479 3' -58.2 NC_003324.1 + 48079 0.7 0.335565
Target:  5'- gAUCGCUUCAU-GAGGAucGCGCCGaCGUg -3'
miRNA:   3'- gUGGCGGAGUAgCUUCU--CGCGGC-GCG- -5'
12479 3' -58.2 NC_003324.1 + 47644 0.7 0.332404
Target:  5'- gGCCGCCaUCGUCGAgcuguggcacgccGGuGCGCUggacaguuccgucgGCGCg -3'
miRNA:   3'- gUGGCGG-AGUAGCU-------------UCuCGCGG--------------CGCG- -5'
12479 3' -58.2 NC_003324.1 + 38077 0.75 0.169608
Target:  5'- aCugCGCCUUcuggCGAAGcgcgucGGCGCCGUGCu -3'
miRNA:   3'- -GugGCGGAGua--GCUUC------UCGCGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 31525 0.73 0.23131
Target:  5'- cCGCCGuCCUCGUCGuGAGAauggccgccacgcGCGCC-CGCg -3'
miRNA:   3'- -GUGGC-GGAGUAGC-UUCU-------------CGCGGcGCG- -5'
12479 3' -58.2 NC_003324.1 + 27834 0.73 0.243374
Target:  5'- aGCCGCUgguguagUUGUCGAGGuaGGCGgCGCGCg -3'
miRNA:   3'- gUGGCGG-------AGUAGCUUC--UCGCgGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 48641 0.72 0.2566
Target:  5'- cCGCCGCaacaUCAUCGGcauGAGCcaggagacgcugGCUGCGCa -3'
miRNA:   3'- -GUGGCGg---AGUAGCUu--CUCG------------CGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 12885 0.72 0.269737
Target:  5'- -uUCGCCaUCGUCGAuGGGCGCgGUGUu -3'
miRNA:   3'- guGGCGG-AGUAGCUuCUCGCGgCGCG- -5'
12479 3' -58.2 NC_003324.1 + 1421 0.71 0.290451
Target:  5'- -uUCGCCUCGUCGAGcAGCG-CGaCGCa -3'
miRNA:   3'- guGGCGGAGUAGCUUcUCGCgGC-GCG- -5'
12479 3' -58.2 NC_003324.1 + 39536 0.71 0.30494
Target:  5'- aGCCGucguCCUCGUCGAccacggGGAGCGUCcCGCc -3'
miRNA:   3'- gUGGC----GGAGUAGCU------UCUCGCGGcGCG- -5'
12479 3' -58.2 NC_003324.1 + 54790 0.7 0.327703
Target:  5'- aGCuCGCUcgCAUCGcAGAcCGCCGCGCc -3'
miRNA:   3'- gUG-GCGGa-GUAGCuUCUcGCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.