miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12482 5' -56.3 NC_003324.1 + 14538 0.72 0.317259
Target:  5'- aGGCg--CUGGCGCUCaaGGCCGa-- -3'
miRNA:   3'- gCCGuaaGACCGUGAGagCCGGCaua -5'
12482 5' -56.3 NC_003324.1 + 38319 0.68 0.532484
Target:  5'- uCGGCAUUCcGGCGCUgaaagaggauUUCGGCaacuaCGUGUu -3'
miRNA:   3'- -GCCGUAAGaCCGUGA----------GAGCCG-----GCAUA- -5'
12482 5' -56.3 NC_003324.1 + 47754 0.7 0.384324
Target:  5'- aGGUAUUCUcGGCAC-Cg-GGCCGUGa -3'
miRNA:   3'- gCCGUAAGA-CCGUGaGagCCGGCAUa -5'
12482 5' -56.3 NC_003324.1 + 49508 1.05 0.001363
Target:  5'- gCGGCAUUCUGGCACUCUCGGCCGUAUc -3'
miRNA:   3'- -GCCGUAAGACCGUGAGAGCCGGCAUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.