Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12483 | 3' | -58.4 | NC_003324.1 | + | 34614 | 0.69 | 0.438722 |
Target: 5'- gCUCCGGgaGGCGCUgggcgAUUCCGCUGgCg -3' miRNA: 3'- -GGGGCUg-CCGUGAa----UAGGGCGACgGg -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 38442 | 0.68 | 0.478046 |
Target: 5'- uCCCgcaCGACGGCGaccagcgccgcCCCGgUGCCCu -3' miRNA: 3'- -GGG---GCUGCCGUgaaua------GGGCgACGGG- -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 42182 | 0.66 | 0.579153 |
Target: 5'- gCCgaaCGACGGCACUgcgCCggaGUgaucgGCCCa -3' miRNA: 3'- -GGg--GCUGCCGUGAauaGGg--CGa----CGGG- -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 42856 | 0.73 | 0.244563 |
Target: 5'- aCCCGGCcaaGGCACgu-UCuCCGUUGCCg -3' miRNA: 3'- gGGGCUG---CCGUGaauAG-GGCGACGGg -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 43145 | 0.68 | 0.448145 |
Target: 5'- uCCUCGACGGCgaGCUUGUUgaGCgagcGCCa -3' miRNA: 3'- -GGGGCUGCCG--UGAAUAGggCGa---CGGg -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 46549 | 0.67 | 0.50688 |
Target: 5'- uUCCCG-UGGCugUUcAUCCgGaaGCCCu -3' miRNA: 3'- -GGGGCuGCCGugAA-UAGGgCgaCGGG- -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 49087 | 0.66 | 0.558196 |
Target: 5'- -gCCGaaaGCGGCGucUAUUUCGCUGCCg -3' miRNA: 3'- ggGGC---UGCCGUgaAUAGGGCGACGGg -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 49703 | 1.13 | 0.000344 |
Target: 5'- uCCCCGACGGCACUUAUCCCGCUGCCCu -3' miRNA: 3'- -GGGGCUGCCGUGAAUAGGGCGACGGG- -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 50320 | 0.73 | 0.226764 |
Target: 5'- uCCCUGACGaucGC-CUgAUCgCCGCUGCCUa -3' miRNA: 3'- -GGGGCUGC---CGuGAaUAG-GGCGACGGG- -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 57266 | 0.68 | 0.48691 |
Target: 5'- -aCC-ACGGCGCUUGUCUgugaGCggcagGCCCu -3' miRNA: 3'- ggGGcUGCCGUGAAUAGGg---CGa----CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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