Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12483 | 3' | -58.4 | NC_003324.1 | + | 7864 | 0.69 | 0.429413 |
Target: 5'- gCCgCGGCGGCAaag--CCCGUUGCg- -3' miRNA: 3'- -GGgGCUGCCGUgaauaGGGCGACGgg -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 34614 | 0.69 | 0.438722 |
Target: 5'- gCUCCGGgaGGCGCUgggcgAUUCCGCUGgCg -3' miRNA: 3'- -GGGGCUg-CCGUGAa----UAGGGCGACgGg -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 32638 | 0.68 | 0.476086 |
Target: 5'- gCUgGAUGGCACgagcgcaacgGagacgaaaagcucUCCCGCUGCCUc -3' miRNA: 3'- gGGgCUGCCGUGaa--------U-------------AGGGCGACGGG- -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 38442 | 0.68 | 0.478046 |
Target: 5'- uCCCgcaCGACGGCGaccagcgccgcCCCGgUGCCCu -3' miRNA: 3'- -GGG---GCUGCCGUgaaua------GGGCgACGGG- -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 57266 | 0.68 | 0.48691 |
Target: 5'- -aCC-ACGGCGCUUGUCUgugaGCggcagGCCCu -3' miRNA: 3'- ggGGcUGCCGUGAAUAGGg---CGa----CGGG- -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 46549 | 0.67 | 0.50688 |
Target: 5'- uUCCCG-UGGCugUUcAUCCgGaaGCCCu -3' miRNA: 3'- -GGGGCuGCCGugAA-UAGGgCgaCGGG- -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 15629 | 0.67 | 0.53746 |
Target: 5'- aCCCGGuCGGCGCUU-UCCaUGUcGCCg -3' miRNA: 3'- gGGGCU-GCCGUGAAuAGG-GCGaCGGg -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 24668 | 0.66 | 0.589697 |
Target: 5'- gCCCCGAUGauccuGCGCUggucgCCCGCaGCg- -3' miRNA: 3'- -GGGGCUGC-----CGUGAaua--GGGCGaCGgg -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 12897 | 0.66 | 0.607693 |
Target: 5'- cCCCUuGCGGCGCgUcgaaacgcuggaugGUUuuGCUGCCa -3' miRNA: 3'- -GGGGcUGCCGUGaA--------------UAGggCGACGGg -5' |
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12483 | 3' | -58.4 | NC_003324.1 | + | 11560 | 0.74 | 0.204752 |
Target: 5'- gUCUCGACGGCGCUcuugaCCGCaaugUGCCCc -3' miRNA: 3'- -GGGGCUGCCGUGAauag-GGCG----ACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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