Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12485 | 5' | -57.1 | NC_003324.1 | + | 54990 | 0.69 | 0.445384 |
Target: 5'- gUCAggaacGCGCCCuCAaucucUCGCuUGCGGGCGc -3' miRNA: 3'- aAGU-----UGCGGGuGU-----AGCG-ACGUCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 54594 | 0.69 | 0.398232 |
Target: 5'- --gAACGCCgGUcgCGCUGCAGGCu- -3' miRNA: 3'- aagUUGCGGgUGuaGCGACGUCCGcc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 54044 | 0.67 | 0.516256 |
Target: 5'- aUUGGCGCgCAgAggcuuUCGCUGC-GGCGGa -3' miRNA: 3'- aAGUUGCGgGUgU-----AGCGACGuCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 54027 | 0.68 | 0.465102 |
Target: 5'- cUCGAaauUGUCgGCGUCuuuCUGCAGGCGGc -3' miRNA: 3'- aAGUU---GCGGgUGUAGc--GACGUCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 53738 | 0.67 | 0.537354 |
Target: 5'- cUCGGCGCuCCAaggUGCcGCAcGGCGGu -3' miRNA: 3'- aAGUUGCG-GGUguaGCGaCGU-CCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 51809 | 0.68 | 0.492418 |
Target: 5'- cUUGGCGCCCucggcgauuGCGUCGgccucgcugauaucCUGCAGGCGc -3' miRNA: 3'- aAGUUGCGGG---------UGUAGC--------------GACGUCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 50830 | 1.07 | 0.00079 |
Target: 5'- gUUCAACGCCCACAUCGCUGCAGGCGGu -3' miRNA: 3'- -AAGUUGCGGGUGUAGCGACGUCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 50099 | 0.66 | 0.602153 |
Target: 5'- aUCAGCgGCCC-CAgCGCuugccgaucuUGUGGGCGGc -3' miRNA: 3'- aAGUUG-CGGGuGUaGCG----------ACGUCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 49706 | 0.67 | 0.548015 |
Target: 5'- -cCGACGgcacuuauCCCGCugccCUGCAGGCGGg -3' miRNA: 3'- aaGUUGC--------GGGUGuagcGACGUCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 49094 | 0.67 | 0.505832 |
Target: 5'- -gCGGCGUCUAUuUCGCUGCcGGUGa -3' miRNA: 3'- aaGUUGCGGGUGuAGCGACGuCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 48738 | 0.73 | 0.250484 |
Target: 5'- gUCGGCGCCaGCAg-GCUGCAGGCc- -3' miRNA: 3'- aAGUUGCGGgUGUagCGACGUCCGcc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 48621 | 0.66 | 0.602153 |
Target: 5'- gUCGGCGCCCGCAUCcgGCUccgccGCAacaucaucGGCa- -3' miRNA: 3'- aAGUUGCGGGUGUAG--CGA-----CGU--------CCGcc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 45767 | 0.66 | 0.59124 |
Target: 5'- aUCAugGCCUGCcaCGCcuuccGCAGaGCGGa -3' miRNA: 3'- aAGUugCGGGUGuaGCGa----CGUC-CGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 43814 | 0.67 | 0.557666 |
Target: 5'- uUUCAcagucGCGaCCCugAUCccgauugGCaGCAGGCGGu -3' miRNA: 3'- -AAGU-----UGC-GGGugUAG-------CGaCGUCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 42387 | 0.75 | 0.182618 |
Target: 5'- -cCGGCGCCCgGCA-CGUgGCAGGCGGc -3' miRNA: 3'- aaGUUGCGGG-UGUaGCGaCGUCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 40925 | 0.67 | 0.548015 |
Target: 5'- aUCAGCaaUCAC--CGCUGCgAGGCGGa -3' miRNA: 3'- aAGUUGcgGGUGuaGCGACG-UCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 39460 | 0.67 | 0.548015 |
Target: 5'- cUCGAUGCgCCACAUCGg-GUcGGCGa -3' miRNA: 3'- aAGUUGCG-GGUGUAGCgaCGuCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 38846 | 0.73 | 0.231774 |
Target: 5'- gUCGGCGuCCCACcagcUCGCgaaaUGCAGGCGa -3' miRNA: 3'- aAGUUGC-GGGUGu---AGCG----ACGUCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 36867 | 0.66 | 0.624045 |
Target: 5'- aUCAGCGCCUuccgcuuggggaACAUCGC-GCAaccaaugucGGCGu -3' miRNA: 3'- aAGUUGCGGG------------UGUAGCGaCGU---------CCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 34908 | 0.68 | 0.475129 |
Target: 5'- gUUCGACGaCgGCga-GCUGCAGGCGa -3' miRNA: 3'- -AAGUUGCgGgUGuagCGACGUCCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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