miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12485 5' -57.1 NC_003324.1 + 2276 0.69 0.398232
Target:  5'- -gCAGCGaCCGCGaccCGCcccUGCGGGCGGg -3'
miRNA:   3'- aaGUUGCgGGUGUa--GCG---ACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 2376 0.69 0.395506
Target:  5'- aUUCAGgaagcagccCGCCCGCAggggcgggucgcggUCGCUGCGGGaguGGu -3'
miRNA:   3'- -AAGUU---------GCGGGUGU--------------AGCGACGUCCg--CC- -5'
12485 5' -57.1 NC_003324.1 + 4882 0.67 0.548015
Target:  5'- gUUCAugGgCCGucaggcuggcguUAUCGCUuucggcuccGCAGGCGGc -3'
miRNA:   3'- -AAGUugCgGGU------------GUAGCGA---------CGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 5429 0.67 0.526766
Target:  5'- -gCGGCGCcgaguucuucuCCGCAUCGaCgcugggucagGCAGGCGGc -3'
miRNA:   3'- aaGUUGCG-----------GGUGUAGC-Ga---------CGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 5640 0.68 0.485263
Target:  5'- --uGACGCCCGCGgcgaagGUUGC-GGCGGc -3'
miRNA:   3'- aagUUGCGGGUGUag----CGACGuCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 5909 0.68 0.492418
Target:  5'- cUUgAugGCCCgacagucgaagaauACGUCGCUGCuGGCu- -3'
miRNA:   3'- -AAgUugCGGG--------------UGUAGCGACGuCCGcc -5'
12485 5' -57.1 NC_003324.1 + 9654 0.67 0.525711
Target:  5'- -gCAACGCCaACG-CGCUGggcggcguggggcCGGGCGGa -3'
miRNA:   3'- aaGUUGCGGgUGUaGCGAC-------------GUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 9727 0.66 0.580362
Target:  5'- -cCAGCGCgUugG-CGUUGCcGGCGGu -3'
miRNA:   3'- aaGUUGCGgGugUaGCGACGuCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 16155 0.7 0.362893
Target:  5'- ---cGCGCCagGCAUCGCUGgCaccgAGGCGGg -3'
miRNA:   3'- aaguUGCGGg-UGUAGCGAC-G----UCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 19384 0.67 0.526766
Target:  5'- aUCGACGCCggcgCGCGUCGCgccgUGCAugaGGuCGGc -3'
miRNA:   3'- aAGUUGCGG----GUGUAGCG----ACGU---CC-GCC- -5'
12485 5' -57.1 NC_003324.1 + 20829 0.71 0.329789
Target:  5'- -gCAugGCCgACAUCGagaaGCAGGCGc -3'
miRNA:   3'- aaGUugCGGgUGUAGCga--CGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 23535 0.69 0.407406
Target:  5'- aUCggUGCCCcacaGCGUgGCgGCGGGCGc -3'
miRNA:   3'- aAGuuGCGGG----UGUAgCGaCGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 24798 0.66 0.59124
Target:  5'- -cCGGCGUUCuugaggaagGCAUUGUucgGCAGGCGGa -3'
miRNA:   3'- aaGUUGCGGG---------UGUAGCGa--CGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 27749 0.68 0.495499
Target:  5'- cUCGGCGCCaCGCAugagguggUCGCgaacgGCAaGCGGu -3'
miRNA:   3'- aAGUUGCGG-GUGU--------AGCGa----CGUcCGCC- -5'
12485 5' -57.1 NC_003324.1 + 28623 0.8 0.083825
Target:  5'- cUCGugGCCCGgAUCGUUGCGGGCc- -3'
miRNA:   3'- aAGUugCGGGUgUAGCGACGUCCGcc -5'
12485 5' -57.1 NC_003324.1 + 29459 0.66 0.569527
Target:  5'- cUCGACGaugacacggCCGCcUgGCUGCGGGCGc -3'
miRNA:   3'- aAGUUGCg--------GGUGuAgCGACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 31133 0.67 0.548015
Target:  5'- gUUCuuGCGCCUgg--CGCUGCAGGCc- -3'
miRNA:   3'- -AAGu-UGCGGGuguaGCGACGUCCGcc -5'
12485 5' -57.1 NC_003324.1 + 34908 0.68 0.475129
Target:  5'- gUUCGACGaCgGCga-GCUGCAGGCGa -3'
miRNA:   3'- -AAGUUGCgGgUGuagCGACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 36867 0.66 0.624045
Target:  5'- aUCAGCGCCUuccgcuuggggaACAUCGC-GCAaccaaugucGGCGu -3'
miRNA:   3'- aAGUUGCGGG------------UGUAGCGaCGU---------CCGCc -5'
12485 5' -57.1 NC_003324.1 + 38846 0.73 0.231774
Target:  5'- gUCGGCGuCCCACcagcUCGCgaaaUGCAGGCGa -3'
miRNA:   3'- aAGUUGC-GGGUGu---AGCG----ACGUCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.