miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12485 5' -57.1 NC_003324.1 + 39460 0.67 0.548015
Target:  5'- cUCGAUGCgCCACAUCGg-GUcGGCGa -3'
miRNA:   3'- aAGUUGCG-GGUGUAGCgaCGuCCGCc -5'
12485 5' -57.1 NC_003324.1 + 40925 0.67 0.548015
Target:  5'- aUCAGCaaUCAC--CGCUGCgAGGCGGa -3'
miRNA:   3'- aAGUUGcgGGUGuaGCGACG-UCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 42387 0.75 0.182618
Target:  5'- -cCGGCGCCCgGCA-CGUgGCAGGCGGc -3'
miRNA:   3'- aaGUUGCGGG-UGUaGCGaCGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 43814 0.67 0.557666
Target:  5'- uUUCAcagucGCGaCCCugAUCccgauugGCaGCAGGCGGu -3'
miRNA:   3'- -AAGU-----UGC-GGGugUAG-------CGaCGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 45767 0.66 0.59124
Target:  5'- aUCAugGCCUGCcaCGCcuuccGCAGaGCGGa -3'
miRNA:   3'- aAGUugCGGGUGuaGCGa----CGUC-CGCC- -5'
12485 5' -57.1 NC_003324.1 + 48621 0.66 0.602153
Target:  5'- gUCGGCGCCCGCAUCcgGCUccgccGCAacaucaucGGCa- -3'
miRNA:   3'- aAGUUGCGGGUGUAG--CGA-----CGU--------CCGcc -5'
12485 5' -57.1 NC_003324.1 + 48738 0.73 0.250484
Target:  5'- gUCGGCGCCaGCAg-GCUGCAGGCc- -3'
miRNA:   3'- aAGUUGCGGgUGUagCGACGUCCGcc -5'
12485 5' -57.1 NC_003324.1 + 49094 0.67 0.505832
Target:  5'- -gCGGCGUCUAUuUCGCUGCcGGUGa -3'
miRNA:   3'- aaGUUGCGGGUGuAGCGACGuCCGCc -5'
12485 5' -57.1 NC_003324.1 + 49706 0.67 0.548015
Target:  5'- -cCGACGgcacuuauCCCGCugccCUGCAGGCGGg -3'
miRNA:   3'- aaGUUGC--------GGGUGuagcGACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 50099 0.66 0.602153
Target:  5'- aUCAGCgGCCC-CAgCGCuugccgaucuUGUGGGCGGc -3'
miRNA:   3'- aAGUUG-CGGGuGUaGCG----------ACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 50830 1.07 0.00079
Target:  5'- gUUCAACGCCCACAUCGCUGCAGGCGGu -3'
miRNA:   3'- -AAGUUGCGGGUGUAGCGACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 51809 0.68 0.492418
Target:  5'- cUUGGCGCCCucggcgauuGCGUCGgccucgcugauaucCUGCAGGCGc -3'
miRNA:   3'- aAGUUGCGGG---------UGUAGC--------------GACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 53738 0.67 0.537354
Target:  5'- cUCGGCGCuCCAaggUGCcGCAcGGCGGu -3'
miRNA:   3'- aAGUUGCG-GGUguaGCGaCGU-CCGCC- -5'
12485 5' -57.1 NC_003324.1 + 54027 0.68 0.465102
Target:  5'- cUCGAaauUGUCgGCGUCuuuCUGCAGGCGGc -3'
miRNA:   3'- aAGUU---GCGGgUGUAGc--GACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 54044 0.67 0.516256
Target:  5'- aUUGGCGCgCAgAggcuuUCGCUGC-GGCGGa -3'
miRNA:   3'- aAGUUGCGgGUgU-----AGCGACGuCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 54594 0.69 0.398232
Target:  5'- --gAACGCCgGUcgCGCUGCAGGCu- -3'
miRNA:   3'- aagUUGCGGgUGuaGCGACGUCCGcc -5'
12485 5' -57.1 NC_003324.1 + 54990 0.69 0.445384
Target:  5'- gUCAggaacGCGCCCuCAaucucUCGCuUGCGGGCGc -3'
miRNA:   3'- aAGU-----UGCGGGuGU-----AGCG-ACGUCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.