miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12485 5' -57.1 NC_003324.1 + 9654 0.67 0.525711
Target:  5'- -gCAACGCCaACG-CGCUGggcggcguggggcCGGGCGGa -3'
miRNA:   3'- aaGUUGCGGgUGUaGCGAC-------------GUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 5429 0.67 0.526766
Target:  5'- -gCGGCGCcgaguucuucuCCGCAUCGaCgcugggucagGCAGGCGGc -3'
miRNA:   3'- aaGUUGCG-----------GGUGUAGC-Ga---------CGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 19384 0.67 0.526766
Target:  5'- aUCGACGCCggcgCGCGUCGCgccgUGCAugaGGuCGGc -3'
miRNA:   3'- aAGUUGCGG----GUGUAGCG----ACGU---CC-GCC- -5'
12485 5' -57.1 NC_003324.1 + 53738 0.67 0.537354
Target:  5'- cUCGGCGCuCCAaggUGCcGCAcGGCGGu -3'
miRNA:   3'- aAGUUGCG-GGUguaGCGaCGU-CCGCC- -5'
12485 5' -57.1 NC_003324.1 + 40925 0.67 0.548015
Target:  5'- aUCAGCaaUCAC--CGCUGCgAGGCGGa -3'
miRNA:   3'- aAGUUGcgGGUGuaGCGACG-UCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 4882 0.67 0.548015
Target:  5'- gUUCAugGgCCGucaggcuggcguUAUCGCUuucggcuccGCAGGCGGc -3'
miRNA:   3'- -AAGUugCgGGU------------GUAGCGA---------CGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 39460 0.67 0.548015
Target:  5'- cUCGAUGCgCCACAUCGg-GUcGGCGa -3'
miRNA:   3'- aAGUUGCG-GGUGUAGCgaCGuCCGCc -5'
12485 5' -57.1 NC_003324.1 + 49706 0.67 0.548015
Target:  5'- -cCGACGgcacuuauCCCGCugccCUGCAGGCGGg -3'
miRNA:   3'- aaGUUGC--------GGGUGuagcGACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 31133 0.67 0.548015
Target:  5'- gUUCuuGCGCCUgg--CGCUGCAGGCc- -3'
miRNA:   3'- -AAGu-UGCGGGuguaGCGACGUCCGcc -5'
12485 5' -57.1 NC_003324.1 + 43814 0.67 0.557666
Target:  5'- uUUCAcagucGCGaCCCugAUCccgauugGCaGCAGGCGGu -3'
miRNA:   3'- -AAGU-----UGC-GGGugUAG-------CGaCGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 29459 0.66 0.569527
Target:  5'- cUCGACGaugacacggCCGCcUgGCUGCGGGCGc -3'
miRNA:   3'- aAGUUGCg--------GGUGuAgCGACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 9727 0.66 0.580362
Target:  5'- -cCAGCGCgUugG-CGUUGCcGGCGGu -3'
miRNA:   3'- aaGUUGCGgGugUaGCGACGuCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 24798 0.66 0.59124
Target:  5'- -cCGGCGUUCuugaggaagGCAUUGUucgGCAGGCGGa -3'
miRNA:   3'- aaGUUGCGGG---------UGUAGCGa--CGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 45767 0.66 0.59124
Target:  5'- aUCAugGCCUGCcaCGCcuuccGCAGaGCGGa -3'
miRNA:   3'- aAGUugCGGGUGuaGCGa----CGUC-CGCC- -5'
12485 5' -57.1 NC_003324.1 + 50099 0.66 0.602153
Target:  5'- aUCAGCgGCCC-CAgCGCuugccgaucuUGUGGGCGGc -3'
miRNA:   3'- aAGUUG-CGGGuGUaGCG----------ACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 48621 0.66 0.602153
Target:  5'- gUCGGCGCCCGCAUCcgGCUccgccGCAacaucaucGGCa- -3'
miRNA:   3'- aAGUUGCGGGUGUAG--CGA-----CGU--------CCGcc -5'
12485 5' -57.1 NC_003324.1 + 36867 0.66 0.624045
Target:  5'- aUCAGCGCCUuccgcuuggggaACAUCGC-GCAaccaaugucGGCGu -3'
miRNA:   3'- aAGUUGCGGG------------UGUAGCGaCGU---------CCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.