Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12485 | 5' | -57.1 | NC_003324.1 | + | 5909 | 0.68 | 0.492418 |
Target: 5'- cUUgAugGCCCgacagucgaagaauACGUCGCUGCuGGCu- -3' miRNA: 3'- -AAgUugCGGG--------------UGUAGCGACGuCCGcc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 51809 | 0.68 | 0.492418 |
Target: 5'- cUUGGCGCCCucggcgauuGCGUCGgccucgcugauaucCUGCAGGCGc -3' miRNA: 3'- aAGUUGCGGG---------UGUAGC--------------GACGUCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 5640 | 0.68 | 0.485263 |
Target: 5'- --uGACGCCCGCGgcgaagGUUGC-GGCGGc -3' miRNA: 3'- aagUUGCGGGUGUag----CGACGuCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 34908 | 0.68 | 0.475129 |
Target: 5'- gUUCGACGaCgGCga-GCUGCAGGCGa -3' miRNA: 3'- -AAGUUGCgGgUGuagCGACGUCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 54027 | 0.68 | 0.465102 |
Target: 5'- cUCGAaauUGUCgGCGUCuuuCUGCAGGCGGc -3' miRNA: 3'- aAGUU---GCGGgUGUAGc--GACGUCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 54990 | 0.69 | 0.445384 |
Target: 5'- gUCAggaacGCGCCCuCAaucucUCGCuUGCGGGCGc -3' miRNA: 3'- aAGU-----UGCGGGuGU-----AGCG-ACGUCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 54594 | 0.69 | 0.398232 |
Target: 5'- --gAACGCCgGUcgCGCUGCAGGCu- -3' miRNA: 3'- aagUUGCGGgUGuaGCGACGUCCGcc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 2376 | 0.69 | 0.395506 |
Target: 5'- aUUCAGgaagcagccCGCCCGCAggggcgggucgcggUCGCUGCGGGaguGGu -3' miRNA: 3'- -AAGUU---------GCGGGUGU--------------AGCGACGUCCg--CC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 23535 | 0.69 | 0.407406 |
Target: 5'- aUCggUGCCCcacaGCGUgGCgGCGGGCGc -3' miRNA: 3'- aAGuuGCGGG----UGUAgCGaCGUCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 2276 | 0.69 | 0.398232 |
Target: 5'- -gCAGCGaCCGCGaccCGCcccUGCGGGCGGg -3' miRNA: 3'- aaGUUGCgGGUGUa--GCG---ACGUCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 16155 | 0.7 | 0.362893 |
Target: 5'- ---cGCGCCagGCAUCGCUGgCaccgAGGCGGg -3' miRNA: 3'- aaguUGCGGg-UGUAGCGAC-G----UCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 20829 | 0.71 | 0.329789 |
Target: 5'- -gCAugGCCgACAUCGagaaGCAGGCGc -3' miRNA: 3'- aaGUugCGGgUGUAGCga--CGUCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 48738 | 0.73 | 0.250484 |
Target: 5'- gUCGGCGCCaGCAg-GCUGCAGGCc- -3' miRNA: 3'- aAGUUGCGGgUGUagCGACGUCCGcc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 38846 | 0.73 | 0.231774 |
Target: 5'- gUCGGCGuCCCACcagcUCGCgaaaUGCAGGCGa -3' miRNA: 3'- aAGUUGC-GGGUGu---AGCG----ACGUCCGCc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 42387 | 0.75 | 0.182618 |
Target: 5'- -cCGGCGCCCgGCA-CGUgGCAGGCGGc -3' miRNA: 3'- aaGUUGCGGG-UGUaGCGaCGUCCGCC- -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 28623 | 0.8 | 0.083825 |
Target: 5'- cUCGugGCCCGgAUCGUUGCGGGCc- -3' miRNA: 3'- aAGUugCGGGUgUAGCGACGUCCGcc -5' |
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12485 | 5' | -57.1 | NC_003324.1 | + | 50830 | 1.07 | 0.00079 |
Target: 5'- gUUCAACGCCCACAUCGCUGCAGGCGGu -3' miRNA: 3'- -AAGUUGCGGGUGUAGCGACGUCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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