miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12485 5' -57.1 NC_003324.1 + 49094 0.67 0.505832
Target:  5'- -gCGGCGUCUAUuUCGCUGCcGGUGa -3'
miRNA:   3'- aaGUUGCGGGUGuAGCGACGuCCGCc -5'
12485 5' -57.1 NC_003324.1 + 54044 0.67 0.516256
Target:  5'- aUUGGCGCgCAgAggcuuUCGCUGC-GGCGGa -3'
miRNA:   3'- aAGUUGCGgGUgU-----AGCGACGuCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 34908 0.68 0.475129
Target:  5'- gUUCGACGaCgGCga-GCUGCAGGCGa -3'
miRNA:   3'- -AAGUUGCgGgUGuagCGACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 54027 0.68 0.465102
Target:  5'- cUCGAaauUGUCgGCGUCuuuCUGCAGGCGGc -3'
miRNA:   3'- aAGUU---GCGGgUGUAGc--GACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 54990 0.69 0.445384
Target:  5'- gUCAggaacGCGCCCuCAaucucUCGCuUGCGGGCGc -3'
miRNA:   3'- aAGU-----UGCGGGuGU-----AGCG-ACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 54594 0.69 0.398232
Target:  5'- --gAACGCCgGUcgCGCUGCAGGCu- -3'
miRNA:   3'- aagUUGCGGgUGuaGCGACGUCCGcc -5'
12485 5' -57.1 NC_003324.1 + 2376 0.69 0.395506
Target:  5'- aUUCAGgaagcagccCGCCCGCAggggcgggucgcggUCGCUGCGGGaguGGu -3'
miRNA:   3'- -AAGUU---------GCGGGUGU--------------AGCGACGUCCg--CC- -5'
12485 5' -57.1 NC_003324.1 + 20829 0.71 0.329789
Target:  5'- -gCAugGCCgACAUCGagaaGCAGGCGc -3'
miRNA:   3'- aaGUugCGGgUGUAGCga--CGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 5640 0.68 0.485263
Target:  5'- --uGACGCCCGCGgcgaagGUUGC-GGCGGc -3'
miRNA:   3'- aagUUGCGGGUGUag----CGACGuCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 51809 0.68 0.492418
Target:  5'- cUUGGCGCCCucggcgauuGCGUCGgccucgcugauaucCUGCAGGCGc -3'
miRNA:   3'- aAGUUGCGGG---------UGUAGC--------------GACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 27749 0.68 0.495499
Target:  5'- cUCGGCGCCaCGCAugagguggUCGCgaacgGCAaGCGGu -3'
miRNA:   3'- aAGUUGCGG-GUGU--------AGCGa----CGUcCGCC- -5'
12485 5' -57.1 NC_003324.1 + 53738 0.67 0.537354
Target:  5'- cUCGGCGCuCCAaggUGCcGCAcGGCGGu -3'
miRNA:   3'- aAGUUGCG-GGUguaGCGaCGU-CCGCC- -5'
12485 5' -57.1 NC_003324.1 + 40925 0.67 0.548015
Target:  5'- aUCAGCaaUCAC--CGCUGCgAGGCGGa -3'
miRNA:   3'- aAGUUGcgGGUGuaGCGACG-UCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 43814 0.67 0.557666
Target:  5'- uUUCAcagucGCGaCCCugAUCccgauugGCaGCAGGCGGu -3'
miRNA:   3'- -AAGU-----UGC-GGGugUAG-------CGaCGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 9727 0.66 0.580362
Target:  5'- -cCAGCGCgUugG-CGUUGCcGGCGGu -3'
miRNA:   3'- aaGUUGCGgGugUaGCGACGuCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 50099 0.66 0.602153
Target:  5'- aUCAGCgGCCC-CAgCGCuugccgaucuUGUGGGCGGc -3'
miRNA:   3'- aAGUUG-CGGGuGUaGCG----------ACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 42387 0.75 0.182618
Target:  5'- -cCGGCGCCCgGCA-CGUgGCAGGCGGc -3'
miRNA:   3'- aaGUUGCGGG-UGUaGCGaCGUCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.