miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12485 5' -57.1 NC_003324.1 + 51809 0.68 0.492418
Target:  5'- cUUGGCGCCCucggcgauuGCGUCGgccucgcugauaucCUGCAGGCGc -3'
miRNA:   3'- aAGUUGCGGG---------UGUAGC--------------GACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 5909 0.68 0.492418
Target:  5'- cUUgAugGCCCgacagucgaagaauACGUCGCUGCuGGCu- -3'
miRNA:   3'- -AAgUugCGGG--------------UGUAGCGACGuCCGcc -5'
12485 5' -57.1 NC_003324.1 + 5640 0.68 0.485263
Target:  5'- --uGACGCCCGCGgcgaagGUUGC-GGCGGc -3'
miRNA:   3'- aagUUGCGGGUGUag----CGACGuCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 34908 0.68 0.475129
Target:  5'- gUUCGACGaCgGCga-GCUGCAGGCGa -3'
miRNA:   3'- -AAGUUGCgGgUGuagCGACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 54027 0.68 0.465102
Target:  5'- cUCGAaauUGUCgGCGUCuuuCUGCAGGCGGc -3'
miRNA:   3'- aAGUU---GCGGgUGUAGc--GACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 54990 0.69 0.445384
Target:  5'- gUCAggaacGCGCCCuCAaucucUCGCuUGCGGGCGc -3'
miRNA:   3'- aAGU-----UGCGGGuGU-----AGCG-ACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 23535 0.69 0.407406
Target:  5'- aUCggUGCCCcacaGCGUgGCgGCGGGCGc -3'
miRNA:   3'- aAGuuGCGGG----UGUAgCGaCGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 54594 0.69 0.398232
Target:  5'- --gAACGCCgGUcgCGCUGCAGGCu- -3'
miRNA:   3'- aagUUGCGGgUGuaGCGACGUCCGcc -5'
12485 5' -57.1 NC_003324.1 + 2276 0.69 0.398232
Target:  5'- -gCAGCGaCCGCGaccCGCcccUGCGGGCGGg -3'
miRNA:   3'- aaGUUGCgGGUGUa--GCG---ACGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 2376 0.69 0.395506
Target:  5'- aUUCAGgaagcagccCGCCCGCAggggcgggucgcggUCGCUGCGGGaguGGu -3'
miRNA:   3'- -AAGUU---------GCGGGUGU--------------AGCGACGUCCg--CC- -5'
12485 5' -57.1 NC_003324.1 + 16155 0.7 0.362893
Target:  5'- ---cGCGCCagGCAUCGCUGgCaccgAGGCGGg -3'
miRNA:   3'- aaguUGCGGg-UGUAGCGAC-G----UCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 20829 0.71 0.329789
Target:  5'- -gCAugGCCgACAUCGagaaGCAGGCGc -3'
miRNA:   3'- aaGUugCGGgUGUAGCga--CGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 48738 0.73 0.250484
Target:  5'- gUCGGCGCCaGCAg-GCUGCAGGCc- -3'
miRNA:   3'- aAGUUGCGGgUGUagCGACGUCCGcc -5'
12485 5' -57.1 NC_003324.1 + 38846 0.73 0.231774
Target:  5'- gUCGGCGuCCCACcagcUCGCgaaaUGCAGGCGa -3'
miRNA:   3'- aAGUUGC-GGGUGu---AGCG----ACGUCCGCc -5'
12485 5' -57.1 NC_003324.1 + 42387 0.75 0.182618
Target:  5'- -cCGGCGCCCgGCA-CGUgGCAGGCGGc -3'
miRNA:   3'- aaGUUGCGGG-UGUaGCGaCGUCCGCC- -5'
12485 5' -57.1 NC_003324.1 + 28623 0.8 0.083825
Target:  5'- cUCGugGCCCGgAUCGUUGCGGGCc- -3'
miRNA:   3'- aAGUugCGGGUgUAGCGACGUCCGcc -5'
12485 5' -57.1 NC_003324.1 + 50830 1.07 0.00079
Target:  5'- gUUCAACGCCCACAUCGCUGCAGGCGGu -3'
miRNA:   3'- -AAGUUGCGGGUGUAGCGACGUCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.