miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12486 3' -51.7 NC_003324.1 + 1322 0.67 0.857168
Target:  5'- aCGCCUCcGACGu-GCuCGACUcCCUCGu -3'
miRNA:   3'- -GUGGGGuUUGUuuCG-GCUGAaGGAGC- -5'
12486 3' -51.7 NC_003324.1 + 5417 0.66 0.881543
Target:  5'- gCGCCCgCAccuGCGgcGCCGAgUUCUUCu -3'
miRNA:   3'- -GUGGG-GUu--UGUuuCGGCUgAAGGAGc -5'
12486 3' -51.7 NC_003324.1 + 5954 0.68 0.782049
Target:  5'- uCAUCCC---CAAGGCCGGgugcggUUUCCUCGa -3'
miRNA:   3'- -GUGGGGuuuGUUUCGGCU------GAAGGAGC- -5'
12486 3' -51.7 NC_003324.1 + 7382 0.66 0.873677
Target:  5'- uCugCCCGcACGcuGcCCGGCUUCCUg- -3'
miRNA:   3'- -GugGGGUuUGUuuC-GGCUGAAGGAgc -5'
12486 3' -51.7 NC_003324.1 + 8481 0.67 0.839674
Target:  5'- aCGCCCCGAugGuGGCCGgaGCUga-UCGa -3'
miRNA:   3'- -GUGGGGUUugUuUCGGC--UGAaggAGC- -5'
12486 3' -51.7 NC_003324.1 + 13086 0.7 0.674322
Target:  5'- cCGCCgCCGAcCGccGCCGACgcagCCUCGc -3'
miRNA:   3'- -GUGG-GGUUuGUuuCGGCUGaa--GGAGC- -5'
12486 3' -51.7 NC_003324.1 + 17729 0.66 0.896465
Target:  5'- cCGCgCC-AACGucGUCGAUaUCCUCGg -3'
miRNA:   3'- -GUGgGGuUUGUuuCGGCUGaAGGAGC- -5'
12486 3' -51.7 NC_003324.1 + 20165 0.68 0.792127
Target:  5'- gAUCCaGAACGcuGCCGGCagCCUCGg -3'
miRNA:   3'- gUGGGgUUUGUuuCGGCUGaaGGAGC- -5'
12486 3' -51.7 NC_003324.1 + 23142 0.66 0.889141
Target:  5'- cCACCUCGuggGACAGuggggcGCCGAUUUCgUCa -3'
miRNA:   3'- -GUGGGGU---UUGUUu-----CGGCUGAAGgAGc -5'
12486 3' -51.7 NC_003324.1 + 24935 0.7 0.707624
Target:  5'- cCGCCCgCGAGCAGauugccaagacGGCCGACcUUgUCGg -3'
miRNA:   3'- -GUGGG-GUUUGUU-----------UCGGCUGaAGgAGC- -5'
12486 3' -51.7 NC_003324.1 + 25984 0.67 0.839674
Target:  5'- gCGCCCCAGACcagaucgauAGGcCCGACUUCg--- -3'
miRNA:   3'- -GUGGGGUUUGu--------UUC-GGCUGAAGgagc -5'
12486 3' -51.7 NC_003324.1 + 27672 0.66 0.903511
Target:  5'- cCACCUCAuGCGuggcGCCGAgCUucUCCUUGg -3'
miRNA:   3'- -GUGGGGUuUGUuu--CGGCU-GA--AGGAGC- -5'
12486 3' -51.7 NC_003324.1 + 27989 0.68 0.821268
Target:  5'- gACCCCGcACGuGGCCG-CUUCgaCGa -3'
miRNA:   3'- gUGGGGUuUGUuUCGGCuGAAGgaGC- -5'
12486 3' -51.7 NC_003324.1 + 30062 0.72 0.562243
Target:  5'- aCGCCgCCGGucGCGAcaccGGCCGcugcgGCUUCCUCGa -3'
miRNA:   3'- -GUGG-GGUU--UGUU----UCGGC-----UGAAGGAGC- -5'
12486 3' -51.7 NC_003324.1 + 30814 0.66 0.896465
Target:  5'- uCACuCCCGAGCAGcaggcGGCCGACg-CCa-- -3'
miRNA:   3'- -GUG-GGGUUUGUU-----UCGGCUGaaGGagc -5'
12486 3' -51.7 NC_003324.1 + 32344 0.67 0.86555
Target:  5'- cCugCCUAGcgGCAucGcCCGGCUUCCUg- -3'
miRNA:   3'- -GugGGGUU--UGUuuC-GGCUGAAGGAgc -5'
12486 3' -51.7 NC_003324.1 + 35516 0.66 0.873677
Target:  5'- gAUCCUgcACGAAGCCGGgUUCgUCu -3'
miRNA:   3'- gUGGGGuuUGUUUCGGCUgAAGgAGc -5'
12486 3' -51.7 NC_003324.1 + 37752 0.72 0.562243
Target:  5'- gCAgCUUGAGCGGGaucGCCGACUUCCUCu -3'
miRNA:   3'- -GUgGGGUUUGUUU---CGGCUGAAGGAGc -5'
12486 3' -51.7 NC_003324.1 + 38040 0.72 0.59567
Target:  5'- cCGCCgaCCGAcACGAgacGGCgGACUUCCUCGc -3'
miRNA:   3'- -GUGG--GGUU-UGUU---UCGgCUGAAGGAGC- -5'
12486 3' -51.7 NC_003324.1 + 38191 0.67 0.863061
Target:  5'- aCGCCCCAcaagaacggucaccAGCAcggcGCCGACgcgCUUCGc -3'
miRNA:   3'- -GUGGGGU--------------UUGUuu--CGGCUGaa-GGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.