Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12487 | 3' | -58 | NC_003324.1 | + | 39160 | 0.7 | 0.414765 |
Target: 5'- gUCGGUGAcgaucggcaccuucuGGcgCAGCCacgGCGGCaACCGa -3' miRNA: 3'- -GGCCACU---------------UCuaGUCGG---CGCCGcUGGC- -5' |
|||||||
12487 | 3' | -58 | NC_003324.1 | + | 39964 | 0.66 | 0.589697 |
Target: 5'- gCGcUGGAGAUCGGCaagGaaGCGGCCGa -3' miRNA: 3'- gGCcACUUCUAGUCGg--CgcCGCUGGC- -5' |
|||||||
12487 | 3' | -58 | NC_003324.1 | + | 45822 | 0.66 | 0.600274 |
Target: 5'- -aGGUGAGG---GGCUGCGGCGAg-- -3' miRNA: 3'- ggCCACUUCuagUCGGCGCCGCUggc -5' |
|||||||
12487 | 3' | -58 | NC_003324.1 | + | 49102 | 0.69 | 0.448145 |
Target: 5'- -aGGUGAgaAGcaUGGCCGCgagGGCGGCCGa -3' miRNA: 3'- ggCCACU--UCuaGUCGGCG---CCGCUGGC- -5' |
|||||||
12487 | 3' | -58 | NC_003324.1 | + | 51133 | 0.72 | 0.304936 |
Target: 5'- gCCGGacuaUGAAGGUgAGCCGUcuucaggcaGGUGACCu -3' miRNA: 3'- -GGCC----ACUUCUAgUCGGCG---------CCGCUGGc -5' |
|||||||
12487 | 3' | -58 | NC_003324.1 | + | 51279 | 0.68 | 0.516995 |
Target: 5'- aCGGUuuugcaAGGAUCAGCCGCcGGCaGGCg- -3' miRNA: 3'- gGCCAc-----UUCUAGUCGGCG-CCG-CUGgc -5' |
|||||||
12487 | 3' | -58 | NC_003324.1 | + | 51405 | 1.11 | 0.000531 |
Target: 5'- uCCGGUGAAGAUCAGCCGCGGCGACCGg -3' miRNA: 3'- -GGCCACUUCUAGUCGGCGCCGCUGGC- -5' |
|||||||
12487 | 3' | -58 | NC_003324.1 | + | 54497 | 0.7 | 0.38468 |
Target: 5'- -gGGUGAGGggCAuCCGCGaagccugcagcGCGACCGg -3' miRNA: 3'- ggCCACUUCuaGUcGGCGC-----------CGCUGGC- -5' |
|||||||
12487 | 3' | -58 | NC_003324.1 | + | 56146 | 0.67 | 0.564463 |
Target: 5'- gCGGguucgccagccugGAAGccgaCGGCCGUGGCGACUu -3' miRNA: 3'- gGCCa------------CUUCua--GUCGGCGCCGCUGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home