miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12488 3' -55.1 NC_003324.1 + 52257 1.11 0.000804
Target:  5'- cGUCCUGCCGCCGAAGACAACUCGAGCc -3'
miRNA:   3'- -CAGGACGGCGGCUUCUGUUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 32111 0.75 0.258186
Target:  5'- -gCC-GCCGCCGGcAGACAGCUCauuccuguuGAGCa -3'
miRNA:   3'- caGGaCGGCGGCU-UCUGUUGAG---------CUCG- -5'
12488 3' -55.1 NC_003324.1 + 25219 0.75 0.271706
Target:  5'- -gCCUG-CGCCGAcuGACggUUCGAGCa -3'
miRNA:   3'- caGGACgGCGGCUu-CUGuuGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 32547 0.74 0.315668
Target:  5'- --gCUGCCGgCGAAGGCGACgaGGGCa -3'
miRNA:   3'- cagGACGGCgGCUUCUGUUGagCUCG- -5'
12488 3' -55.1 NC_003324.1 + 43141 0.73 0.323497
Target:  5'- cGUCCUGCCGUgGGAuGACAcCUCGcgaaccguuaccGGCa -3'
miRNA:   3'- -CAGGACGGCGgCUU-CUGUuGAGC------------UCG- -5'
12488 3' -55.1 NC_003324.1 + 26992 0.73 0.323497
Target:  5'- gGUgUUGCCGCCGGucucugcccACGACUCGAGUc -3'
miRNA:   3'- -CAgGACGGCGGCUuc-------UGUUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 25659 0.73 0.331469
Target:  5'- uGUCaucaCCGCCGAGGACAAuCUCG-GCg -3'
miRNA:   3'- -CAGgac-GGCGGCUUCUGUU-GAGCuCG- -5'
12488 3' -55.1 NC_003324.1 + 53447 0.73 0.347844
Target:  5'- -gUCUGCUcaguGCCGAAGAUgauuGCUUGAGCg -3'
miRNA:   3'- caGGACGG----CGGCUUCUGu---UGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 25136 0.71 0.438054
Target:  5'- ---aUGCCGCCGguGACGcgaUCGAGCu -3'
miRNA:   3'- caggACGGCGGCuuCUGUug-AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 41727 0.71 0.438054
Target:  5'- cGUCgC-GCCGCCGAcGAgAGCgggCGAGCc -3'
miRNA:   3'- -CAG-GaCGGCGGCUuCUgUUGa--GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 21218 0.71 0.447793
Target:  5'- uUCgaGCUGCCGAAGGCGACggCGcGUu -3'
miRNA:   3'- cAGgaCGGCGGCUUCUGUUGa-GCuCG- -5'
12488 3' -55.1 NC_003324.1 + 36807 0.71 0.447793
Target:  5'- -gCCUcGUCGCCGuAGGCA--UCGAGCg -3'
miRNA:   3'- caGGA-CGGCGGCuUCUGUugAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 7554 0.7 0.477707
Target:  5'- -aCCUGCC-CCGAGGuCGGgauuuuggcuCUCGGGCa -3'
miRNA:   3'- caGGACGGcGGCUUCuGUU----------GAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 28179 0.7 0.498188
Target:  5'- cUUCUG-UGCCuGAGugGGCUCGGGCa -3'
miRNA:   3'- cAGGACgGCGGcUUCugUUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 28932 0.7 0.518001
Target:  5'- cUCCUGCUuuggcguGCCGccuGGCGcuGCUUGAGCa -3'
miRNA:   3'- cAGGACGG-------CGGCuu-CUGU--UGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 44011 0.69 0.529613
Target:  5'- --gCUGCCGCCG-GGAUcauGC-CGAGCg -3'
miRNA:   3'- cagGACGGCGGCuUCUGu--UGaGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 36938 0.69 0.529613
Target:  5'- cGUCC-GUCGUCGAGGucCAGCUCGGucGCc -3'
miRNA:   3'- -CAGGaCGGCGGCUUCu-GUUGAGCU--CG- -5'
12488 3' -55.1 NC_003324.1 + 37248 0.69 0.529613
Target:  5'- aUCCUGCCGCggcgcaagGAAGACGACaagCcGGCg -3'
miRNA:   3'- cAGGACGGCGg-------CUUCUGUUGa--GcUCG- -5'
12488 3' -55.1 NC_003324.1 + 33148 0.69 0.550963
Target:  5'- uUCCUGCuuCGCaGGAcGACAGCuucaUCGAGCa -3'
miRNA:   3'- cAGGACG--GCGgCUU-CUGUUG----AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 34503 0.68 0.583447
Target:  5'- -gCCgucgGCCgacaucaccgauGCCGAGGACGGCggCGAGUc -3'
miRNA:   3'- caGGa---CGG------------CGGCUUCUGUUGa-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.