miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12488 3' -55.1 NC_003324.1 + 18960 0.66 0.714485
Target:  5'- cGUCCguggcgaaguaGCgGCCGAA-ACGAC-CGAGCg -3'
miRNA:   3'- -CAGGa----------CGgCGGCUUcUGUUGaGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 32036 0.68 0.638274
Target:  5'- --gCUGuCUGCCGgcGGCGGCUcacggcCGAGCa -3'
miRNA:   3'- cagGAC-GGCGGCuuCUGUUGA------GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 17473 0.67 0.649262
Target:  5'- aGUCCUGCCGUCGc-----GC-CGAGCg -3'
miRNA:   3'- -CAGGACGGCGGCuucuguUGaGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 7327 0.67 0.649262
Target:  5'- cGUUCcGCgCGCCGAGGGCAcGCUgaCGAuGCg -3'
miRNA:   3'- -CAGGaCG-GCGGCUUCUGU-UGA--GCU-CG- -5'
12488 3' -55.1 NC_003324.1 + 24620 0.67 0.649262
Target:  5'- cGUCCcauaGgCGCCGAAGucaccgagcauCAugUCGGGCu -3'
miRNA:   3'- -CAGGa---CgGCGGCUUCu----------GUugAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 33714 0.67 0.671179
Target:  5'- aUCCU-UCGgUGAcGAUGACUCGAGCg -3'
miRNA:   3'- cAGGAcGGCgGCUuCUGUUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 47411 0.67 0.682088
Target:  5'- -gCCUGCCaGgCGGAGcACAGCUuCGAcGCc -3'
miRNA:   3'- caGGACGG-CgGCUUC-UGUUGA-GCU-CG- -5'
12488 3' -55.1 NC_003324.1 + 17629 0.67 0.692949
Target:  5'- ---aUGCCGCCGA-----GCUCGGGCc -3'
miRNA:   3'- caggACGGCGGCUucuguUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 26576 0.66 0.703752
Target:  5'- aUCCU--CGCCGAgaucGGACAacaucGCUUGGGCa -3'
miRNA:   3'- cAGGAcgGCGGCU----UCUGU-----UGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 6078 0.68 0.616293
Target:  5'- gGUCgaGaUCGCCGAGGGCAAgUCGguccaacuuGGCg -3'
miRNA:   3'- -CAGgaC-GGCGGCUUCUGUUgAGC---------UCG- -5'
12488 3' -55.1 NC_003324.1 + 19514 0.68 0.616293
Target:  5'- uUCUUGCCGCgGAAGGCGuccaUC-AGCc -3'
miRNA:   3'- cAGGACGGCGgCUUCUGUug--AGcUCG- -5'
12488 3' -55.1 NC_003324.1 + 36938 0.69 0.529613
Target:  5'- cGUCC-GUCGUCGAGGucCAGCUCGGucGCc -3'
miRNA:   3'- -CAGGaCGGCGGCUUCu-GUUGAGCU--CG- -5'
12488 3' -55.1 NC_003324.1 + 25219 0.75 0.271706
Target:  5'- -gCCUG-CGCCGAcuGACggUUCGAGCa -3'
miRNA:   3'- caGGACgGCGGCUu-CUGuuGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 26992 0.73 0.323497
Target:  5'- gGUgUUGCCGCCGGucucugcccACGACUCGAGUc -3'
miRNA:   3'- -CAgGACGGCGGCUuc-------UGUUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 25136 0.71 0.438054
Target:  5'- ---aUGCCGCCGguGACGcgaUCGAGCu -3'
miRNA:   3'- caggACGGCGGCuuCUGUug-AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 36807 0.71 0.447793
Target:  5'- -gCCUcGUCGCCGuAGGCA--UCGAGCg -3'
miRNA:   3'- caGGA-CGGCGGCuUCUGUugAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 21218 0.71 0.447793
Target:  5'- uUCgaGCUGCCGAAGGCGACggCGcGUu -3'
miRNA:   3'- cAGgaCGGCGGCUUCUGUUGa-GCuCG- -5'
12488 3' -55.1 NC_003324.1 + 28179 0.7 0.498188
Target:  5'- cUUCUG-UGCCuGAGugGGCUCGGGCa -3'
miRNA:   3'- cAGGACgGCGGcUUCugUUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 28932 0.7 0.518001
Target:  5'- cUCCUGCUuuggcguGCCGccuGGCGcuGCUUGAGCa -3'
miRNA:   3'- cAGGACGG-------CGGCuu-CUGU--UGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 44011 0.69 0.529613
Target:  5'- --gCUGCCGCCG-GGAUcauGC-CGAGCg -3'
miRNA:   3'- cagGACGGCGGCuUCUGu--UGaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.