miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12488 3' -55.1 NC_003324.1 + 48478 0.68 0.587811
Target:  5'- uUCCaagGCCgcaGCCGAgcagguaggcgccaaGGGCAACUgCGAGCc -3'
miRNA:   3'- cAGGa--CGG---CGGCU---------------UCUGUUGA-GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 50362 0.66 0.750303
Target:  5'- uUCUUGCCGUCGAccGGCGGCgcaucauucucuuucUCGAcGCg -3'
miRNA:   3'- cAGGACGGCGGCUu-CUGUUG---------------AGCU-CG- -5'
12488 3' -55.1 NC_003324.1 + 48965 0.66 0.746152
Target:  5'- aGUCCuggaUGCgGgCGAAGGCGcgaUUGAGCg -3'
miRNA:   3'- -CAGG----ACGgCgGCUUCUGUug-AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 26293 0.67 0.649262
Target:  5'- uUgCUGCUGCCGAgcgaggGGACGACgcaGAcGCa -3'
miRNA:   3'- cAgGACGGCGGCU------UCUGUUGag-CU-CG- -5'
12488 3' -55.1 NC_003324.1 + 50018 0.68 0.631679
Target:  5'- -gCgUGCUGCUGAucuugaaugcgauggGGGCAGCgaaggCGAGCa -3'
miRNA:   3'- caGgACGGCGGCU---------------UCUGUUGa----GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 43216 0.66 0.735697
Target:  5'- -gCUcGCCGUCGAGGACGGCaaccugCGGGa -3'
miRNA:   3'- caGGaCGGCGGCUUCUGUUGa-----GCUCg -5'
12488 3' -55.1 NC_003324.1 + 40335 0.67 0.692949
Target:  5'- -cCCgGaCCGCaCGcAAGGCGGCagUCGAGCg -3'
miRNA:   3'- caGGaC-GGCG-GC-UUCUGUUG--AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 5331 0.67 0.671179
Target:  5'- -gCCUGCCGCUGGugcGGCGgccaacugauGCUCGAa- -3'
miRNA:   3'- caGGACGGCGGCUu--CUGU----------UGAGCUcg -5'
12488 3' -55.1 NC_003324.1 + 55400 0.68 0.605319
Target:  5'- aUCCUugaGCCGCUGu-GGCAGCUUGuuccAGCa -3'
miRNA:   3'- cAGGA---CGGCGGCuuCUGUUGAGC----UCG- -5'
12488 3' -55.1 NC_003324.1 + 37248 0.69 0.529613
Target:  5'- aUCCUGCCGCggcgcaagGAAGACGACaagCcGGCg -3'
miRNA:   3'- cAGGACGGCGg-------CUUCUGUUGa--GcUCG- -5'
12488 3' -55.1 NC_003324.1 + 32111 0.75 0.258186
Target:  5'- -gCC-GCCGCCGGcAGACAGCUCauuccuguuGAGCa -3'
miRNA:   3'- caGGaCGGCGGCU-UCUGUUGAG---------CUCG- -5'
12488 3' -55.1 NC_003324.1 + 40410 0.66 0.703752
Target:  5'- cUgCUGCagCGCCGAAGgguGCAACUaagcaGGGCa -3'
miRNA:   3'- cAgGACG--GCGGCUUC---UGUUGAg----CUCG- -5'
12488 3' -55.1 NC_003324.1 + 13791 0.66 0.725137
Target:  5'- -gCCUGCCGCCGuccGACGcgacACUUacccAGCa -3'
miRNA:   3'- caGGACGGCGGCuu-CUGU----UGAGc---UCG- -5'
12488 3' -55.1 NC_003324.1 + 31721 0.68 0.616293
Target:  5'- cUCCgGCgCGCCGAAGGaaguGCgCGAGUg -3'
miRNA:   3'- cAGGaCG-GCGGCUUCUgu--UGaGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 2779 0.68 0.605319
Target:  5'- --aCUGCCGCCGccGACA--UCGuGCc -3'
miRNA:   3'- cagGACGGCGGCuuCUGUugAGCuCG- -5'
12488 3' -55.1 NC_003324.1 + 33498 0.67 0.692949
Target:  5'- ----cGCCGauGAAG-CGGCUCGGGCg -3'
miRNA:   3'- caggaCGGCggCUUCuGUUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 33148 0.69 0.550963
Target:  5'- uUCCUGCuuCGCaGGAcGACAGCuucaUCGAGCa -3'
miRNA:   3'- cAGGACG--GCGgCUU-CUGUUG----AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 7554 0.7 0.477707
Target:  5'- -aCCUGCC-CCGAGGuCGGgauuuuggcuCUCGGGCa -3'
miRNA:   3'- caGGACGGcGGCUUCuGUU----------GAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 15615 0.67 0.682088
Target:  5'- uUCCaUGUCGCCGuuggaAAGAUAggucugcuuaaGCUUGGGCa -3'
miRNA:   3'- cAGG-ACGGCGGC-----UUCUGU-----------UGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 28692 0.68 0.616293
Target:  5'- aUCCggGCCa-CGAGGGCGACagCGGGCg -3'
miRNA:   3'- cAGGa-CGGcgGCUUCUGUUGa-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.