Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12488 | 3' | -55.1 | NC_003324.1 | + | 25659 | 0.73 | 0.331469 |
Target: 5'- uGUCaucaCCGCCGAGGACAAuCUCG-GCg -3' miRNA: 3'- -CAGgac-GGCGGCUUCUGUU-GAGCuCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 15615 | 0.67 | 0.682088 |
Target: 5'- uUCCaUGUCGCCGuuggaAAGAUAggucugcuuaaGCUUGGGCa -3' miRNA: 3'- cAGG-ACGGCGGC-----UUCUGU-----------UGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 34503 | 0.68 | 0.583447 |
Target: 5'- -gCCgucgGCCgacaucaccgauGCCGAGGACGGCggCGAGUc -3' miRNA: 3'- caGGa---CGG------------CGGCUUCUGUUGa-GCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 7554 | 0.7 | 0.477707 |
Target: 5'- -aCCUGCC-CCGAGGuCGGgauuuuggcuCUCGGGCa -3' miRNA: 3'- caGGACGGcGGCUUCuGUU----------GAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 43141 | 0.73 | 0.323497 |
Target: 5'- cGUCCUGCCGUgGGAuGACAcCUCGcgaaccguuaccGGCa -3' miRNA: 3'- -CAGGACGGCGgCUU-CUGUuGAGC------------UCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 2779 | 0.68 | 0.605319 |
Target: 5'- --aCUGCCGCCGccGACA--UCGuGCc -3' miRNA: 3'- cagGACGGCGGCuuCUGUugAGCuCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 49208 | 0.66 | 0.755464 |
Target: 5'- uUCCUGCCGacgauCCGAAcgccuGCGACgccaugaUCGGGCa -3' miRNA: 3'- cAGGACGGC-----GGCUUc----UGUUG-------AGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 7327 | 0.67 | 0.649262 |
Target: 5'- cGUUCcGCgCGCCGAGGGCAcGCUgaCGAuGCg -3' miRNA: 3'- -CAGGaCG-GCGGCUUCUGU-UGA--GCU-CG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 26992 | 0.73 | 0.323497 |
Target: 5'- gGUgUUGCCGCCGGucucugcccACGACUCGAGUc -3' miRNA: 3'- -CAgGACGGCGGCUuc-------UGUUGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 17473 | 0.67 | 0.649262 |
Target: 5'- aGUCCUGCCGUCGc-----GC-CGAGCg -3' miRNA: 3'- -CAGGACGGCGGCuucuguUGaGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 32036 | 0.68 | 0.638274 |
Target: 5'- --gCUGuCUGCCGgcGGCGGCUcacggcCGAGCa -3' miRNA: 3'- cagGAC-GGCGGCuuCUGUUGA------GCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 21218 | 0.71 | 0.447793 |
Target: 5'- uUCgaGCUGCCGAAGGCGACggCGcGUu -3' miRNA: 3'- cAGgaCGGCGGCUUCUGUUGa-GCuCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 6513 | 0.66 | 0.725137 |
Target: 5'- cGUCUcgGCCGCUGAGccacGGCAGgguCUgCGAGCu -3' miRNA: 3'- -CAGGa-CGGCGGCUU----CUGUU---GA-GCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 28179 | 0.7 | 0.498188 |
Target: 5'- cUUCUG-UGCCuGAGugGGCUCGGGCa -3' miRNA: 3'- cAGGACgGCGGcUUCugUUGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 42308 | 0.66 | 0.725137 |
Target: 5'- -gCCUGCCacgugccgggcGCCGguGACAgACUUaGAGCg -3' miRNA: 3'- caGGACGG-----------CGGCuuCUGU-UGAG-CUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 51727 | 0.66 | 0.725137 |
Target: 5'- -gCCgacGCaauCGCCGAGGGCGccaagcaguAUUCGAGCu -3' miRNA: 3'- caGGa--CG---GCGGCUUCUGU---------UGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 22950 | 0.66 | 0.735697 |
Target: 5'- cGUCCaGUCuCCGguGGCGAUgCGAGCg -3' miRNA: 3'- -CAGGaCGGcGGCuuCUGUUGaGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 10937 | 0.66 | 0.735697 |
Target: 5'- -gCCaacaCCGCCGggGugAAggcUUCGGGCa -3' miRNA: 3'- caGGac--GGCGGCuuCugUU---GAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 6078 | 0.68 | 0.616293 |
Target: 5'- gGUCgaGaUCGCCGAGGGCAAgUCGguccaacuuGGCg -3' miRNA: 3'- -CAGgaC-GGCGGCUUCUGUUgAGC---------UCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 36647 | 0.66 | 0.756493 |
Target: 5'- uUCCccggcgaaggUGCCGCCGGAGAUg---CGAGa -3' miRNA: 3'- cAGG----------ACGGCGGCUUCUGuugaGCUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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