Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12488 | 3' | -55.1 | NC_003324.1 | + | 21218 | 0.71 | 0.447793 |
Target: 5'- uUCgaGCUGCCGAAGGCGACggCGcGUu -3' miRNA: 3'- cAGgaCGGCGGCUUCUGUUGa-GCuCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 28179 | 0.7 | 0.498188 |
Target: 5'- cUUCUG-UGCCuGAGugGGCUCGGGCa -3' miRNA: 3'- cAGGACgGCGGcUUCugUUGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 28932 | 0.7 | 0.518001 |
Target: 5'- cUCCUGCUuuggcguGCCGccuGGCGcuGCUUGAGCa -3' miRNA: 3'- cAGGACGG-------CGGCuu-CUGU--UGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 44011 | 0.69 | 0.529613 |
Target: 5'- --gCUGCCGCCG-GGAUcauGC-CGAGCg -3' miRNA: 3'- cagGACGGCGGCuUCUGu--UGaGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 36938 | 0.69 | 0.529613 |
Target: 5'- cGUCC-GUCGUCGAGGucCAGCUCGGucGCc -3' miRNA: 3'- -CAGGaCGGCGGCUUCu-GUUGAGCU--CG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 19514 | 0.68 | 0.616293 |
Target: 5'- uUCUUGCCGCgGAAGGCGuccaUC-AGCc -3' miRNA: 3'- cAGGACGGCGgCUUCUGUug--AGcUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 6078 | 0.68 | 0.616293 |
Target: 5'- gGUCgaGaUCGCCGAGGGCAAgUCGguccaacuuGGCg -3' miRNA: 3'- -CAGgaC-GGCGGCUUCUGUUgAGC---------UCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 32036 | 0.68 | 0.638274 |
Target: 5'- --gCUGuCUGCCGgcGGCGGCUcacggcCGAGCa -3' miRNA: 3'- cagGAC-GGCGGCuuCUGUUGA------GCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 15615 | 0.67 | 0.682088 |
Target: 5'- uUCCaUGUCGCCGuuggaAAGAUAggucugcuuaaGCUUGGGCa -3' miRNA: 3'- cAGG-ACGGCGGC-----UUCUGU-----------UGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 5331 | 0.67 | 0.671179 |
Target: 5'- -gCCUGCCGCUGGugcGGCGgccaacugauGCUCGAa- -3' miRNA: 3'- caGGACGGCGGCUu--CUGU----------UGAGCUcg -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 26293 | 0.67 | 0.649262 |
Target: 5'- uUgCUGCUGCCGAgcgaggGGACGACgcaGAcGCa -3' miRNA: 3'- cAgGACGGCGGCU------UCUGUUGag-CU-CG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 50018 | 0.68 | 0.631679 |
Target: 5'- -gCgUGCUGCUGAucuugaaugcgauggGGGCAGCgaaggCGAGCa -3' miRNA: 3'- caGgACGGCGGCU---------------UCUGUUGa----GCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 28692 | 0.68 | 0.616293 |
Target: 5'- aUCCggGCCa-CGAGGGCGACagCGGGCg -3' miRNA: 3'- cAGGa-CGGcgGCUUCUGUUGa-GCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 40335 | 0.67 | 0.692949 |
Target: 5'- -cCCgGaCCGCaCGcAAGGCGGCagUCGAGCg -3' miRNA: 3'- caGGaC-GGCG-GC-UUCUGUUG--AGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 33498 | 0.67 | 0.692949 |
Target: 5'- ----cGCCGauGAAG-CGGCUCGGGCg -3' miRNA: 3'- caggaCGGCggCUUCuGUUGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 40410 | 0.66 | 0.703752 |
Target: 5'- cUgCUGCagCGCCGAAGgguGCAACUaagcaGGGCa -3' miRNA: 3'- cAgGACG--GCGGCUUC---UGUUGAg----CUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 13791 | 0.66 | 0.725137 |
Target: 5'- -gCCUGCCGCCGuccGACGcgacACUUacccAGCa -3' miRNA: 3'- caGGACGGCGGCuu-CUGU----UGAGc---UCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 43216 | 0.66 | 0.735697 |
Target: 5'- -gCUcGCCGUCGAGGACGGCaaccugCGGGa -3' miRNA: 3'- caGGaCGGCGGCUUCUGUUGa-----GCUCg -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 48965 | 0.66 | 0.746152 |
Target: 5'- aGUCCuggaUGCgGgCGAAGGCGcgaUUGAGCg -3' miRNA: 3'- -CAGG----ACGgCgGCUUCUGUug-AGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 32111 | 0.75 | 0.258186 |
Target: 5'- -gCC-GCCGCCGGcAGACAGCUCauuccuguuGAGCa -3' miRNA: 3'- caGGaCGGCGGCU-UCUGUUGAG---------CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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