miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12488 3' -55.1 NC_003324.1 + 5331 0.67 0.671179
Target:  5'- -gCCUGCCGCUGGugcGGCGgccaacugauGCUCGAa- -3'
miRNA:   3'- caGGACGGCGGCUu--CUGU----------UGAGCUcg -5'
12488 3' -55.1 NC_003324.1 + 7327 0.67 0.649262
Target:  5'- cGUUCcGCgCGCCGAGGGCAcGCUgaCGAuGCg -3'
miRNA:   3'- -CAGGaCG-GCGGCUUCUGU-UGA--GCU-CG- -5'
12488 3' -55.1 NC_003324.1 + 17473 0.67 0.649262
Target:  5'- aGUCCUGCCGUCGc-----GC-CGAGCg -3'
miRNA:   3'- -CAGGACGGCGGCuucuguUGaGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 24620 0.67 0.649262
Target:  5'- cGUCCcauaGgCGCCGAAGucaccgagcauCAugUCGGGCu -3'
miRNA:   3'- -CAGGa---CgGCGGCUUCu----------GUugAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 26293 0.67 0.649262
Target:  5'- uUgCUGCUGCCGAgcgaggGGACGACgcaGAcGCa -3'
miRNA:   3'- cAgGACGGCGGCU------UCUGUUGag-CU-CG- -5'
12488 3' -55.1 NC_003324.1 + 32036 0.68 0.638274
Target:  5'- --gCUGuCUGCCGgcGGCGGCUcacggcCGAGCa -3'
miRNA:   3'- cagGAC-GGCGGCuuCUGUUGA------GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 50018 0.68 0.631679
Target:  5'- -gCgUGCUGCUGAucuugaaugcgauggGGGCAGCgaaggCGAGCa -3'
miRNA:   3'- caGgACGGCGGCU---------------UCUGUUGa----GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 28692 0.68 0.616293
Target:  5'- aUCCggGCCa-CGAGGGCGACagCGGGCg -3'
miRNA:   3'- cAGGa-CGGcgGCUUCUGUUGa-GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 19514 0.68 0.616293
Target:  5'- uUCUUGCCGCgGAAGGCGuccaUC-AGCc -3'
miRNA:   3'- cAGGACGGCGgCUUCUGUug--AGcUCG- -5'
12488 3' -55.1 NC_003324.1 + 31721 0.68 0.616293
Target:  5'- cUCCgGCgCGCCGAAGGaaguGCgCGAGUg -3'
miRNA:   3'- cAGGaCG-GCGGCUUCUgu--UGaGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 6078 0.68 0.616293
Target:  5'- gGUCgaGaUCGCCGAGGGCAAgUCGguccaacuuGGCg -3'
miRNA:   3'- -CAGgaC-GGCGGCUUCUGUUgAGC---------UCG- -5'
12488 3' -55.1 NC_003324.1 + 2779 0.68 0.605319
Target:  5'- --aCUGCCGCCGccGACA--UCGuGCc -3'
miRNA:   3'- cagGACGGCGGCuuCUGUugAGCuCG- -5'
12488 3' -55.1 NC_003324.1 + 55400 0.68 0.605319
Target:  5'- aUCCUugaGCCGCUGu-GGCAGCUUGuuccAGCa -3'
miRNA:   3'- cAGGA---CGGCGGCuuCUGUUGAGC----UCG- -5'
12488 3' -55.1 NC_003324.1 + 48478 0.68 0.587811
Target:  5'- uUCCaagGCCgcaGCCGAgcagguaggcgccaaGGGCAACUgCGAGCc -3'
miRNA:   3'- cAGGa--CGG---CGGCU---------------UCUGUUGA-GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 34503 0.68 0.583447
Target:  5'- -gCCgucgGCCgacaucaccgauGCCGAGGACGGCggCGAGUc -3'
miRNA:   3'- caGGa---CGG------------CGGCUUCUGUUGa-GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 33148 0.69 0.550963
Target:  5'- uUCCUGCuuCGCaGGAcGACAGCuucaUCGAGCa -3'
miRNA:   3'- cAGGACG--GCGgCUU-CUGUUG----AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 44011 0.69 0.529613
Target:  5'- --gCUGCCGCCG-GGAUcauGC-CGAGCg -3'
miRNA:   3'- cagGACGGCGGCuUCUGu--UGaGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 36938 0.69 0.529613
Target:  5'- cGUCC-GUCGUCGAGGucCAGCUCGGucGCc -3'
miRNA:   3'- -CAGGaCGGCGGCUUCu-GUUGAGCU--CG- -5'
12488 3' -55.1 NC_003324.1 + 37248 0.69 0.529613
Target:  5'- aUCCUGCCGCggcgcaagGAAGACGACaagCcGGCg -3'
miRNA:   3'- cAGGACGGCGg-------CUUCUGUUGa--GcUCG- -5'
12488 3' -55.1 NC_003324.1 + 28932 0.7 0.518001
Target:  5'- cUCCUGCUuuggcguGCCGccuGGCGcuGCUUGAGCa -3'
miRNA:   3'- cAGGACGG-------CGGCuu-CUGU--UGAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.