Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12488 | 3' | -55.1 | NC_003324.1 | + | 36647 | 0.66 | 0.756493 |
Target: 5'- uUCCccggcgaaggUGCCGCCGGAGAUg---CGAGa -3' miRNA: 3'- cAGG----------ACGGCGGCUUCUGuugaGCUCg -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 34503 | 0.68 | 0.583447 |
Target: 5'- -gCCgucgGCCgacaucaccgauGCCGAGGACGGCggCGAGUc -3' miRNA: 3'- caGGa---CGG------------CGGCUUCUGUUGa-GCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 33714 | 0.67 | 0.671179 |
Target: 5'- aUCCU-UCGgUGAcGAUGACUCGAGCg -3' miRNA: 3'- cAGGAcGGCgGCUuCUGUUGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 33498 | 0.67 | 0.692949 |
Target: 5'- ----cGCCGauGAAG-CGGCUCGGGCg -3' miRNA: 3'- caggaCGGCggCUUCuGUUGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 33148 | 0.69 | 0.550963 |
Target: 5'- uUCCUGCuuCGCaGGAcGACAGCuucaUCGAGCa -3' miRNA: 3'- cAGGACG--GCGgCUU-CUGUUG----AGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 32547 | 0.74 | 0.315668 |
Target: 5'- --gCUGCCGgCGAAGGCGACgaGGGCa -3' miRNA: 3'- cagGACGGCgGCUUCUGUUGagCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 32111 | 0.75 | 0.258186 |
Target: 5'- -gCC-GCCGCCGGcAGACAGCUCauuccuguuGAGCa -3' miRNA: 3'- caGGaCGGCGGCU-UCUGUUGAG---------CUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 32036 | 0.68 | 0.638274 |
Target: 5'- --gCUGuCUGCCGgcGGCGGCUcacggcCGAGCa -3' miRNA: 3'- cagGAC-GGCGGCuuCUGUUGA------GCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 31721 | 0.68 | 0.616293 |
Target: 5'- cUCCgGCgCGCCGAAGGaaguGCgCGAGUg -3' miRNA: 3'- cAGGaCG-GCGGCUUCUgu--UGaGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 28932 | 0.7 | 0.518001 |
Target: 5'- cUCCUGCUuuggcguGCCGccuGGCGcuGCUUGAGCa -3' miRNA: 3'- cAGGACGG-------CGGCuu-CUGU--UGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 28692 | 0.68 | 0.616293 |
Target: 5'- aUCCggGCCa-CGAGGGCGACagCGGGCg -3' miRNA: 3'- cAGGa-CGGcgGCUUCUGUUGa-GCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 28179 | 0.7 | 0.498188 |
Target: 5'- cUUCUG-UGCCuGAGugGGCUCGGGCa -3' miRNA: 3'- cAGGACgGCGGcUUCugUUGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 26992 | 0.73 | 0.323497 |
Target: 5'- gGUgUUGCCGCCGGucucugcccACGACUCGAGUc -3' miRNA: 3'- -CAgGACGGCGGCUuc-------UGUUGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 26576 | 0.66 | 0.703752 |
Target: 5'- aUCCU--CGCCGAgaucGGACAacaucGCUUGGGCa -3' miRNA: 3'- cAGGAcgGCGGCU----UCUGU-----UGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 26293 | 0.67 | 0.649262 |
Target: 5'- uUgCUGCUGCCGAgcgaggGGACGACgcaGAcGCa -3' miRNA: 3'- cAgGACGGCGGCU------UCUGUUGag-CU-CG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 25659 | 0.73 | 0.331469 |
Target: 5'- uGUCaucaCCGCCGAGGACAAuCUCG-GCg -3' miRNA: 3'- -CAGgac-GGCGGCUUCUGUU-GAGCuCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 25219 | 0.75 | 0.271706 |
Target: 5'- -gCCUG-CGCCGAcuGACggUUCGAGCa -3' miRNA: 3'- caGGACgGCGGCUu-CUGuuGAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 25136 | 0.71 | 0.438054 |
Target: 5'- ---aUGCCGCCGguGACGcgaUCGAGCu -3' miRNA: 3'- caggACGGCGGCuuCUGUug-AGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 24620 | 0.67 | 0.649262 |
Target: 5'- cGUCCcauaGgCGCCGAAGucaccgagcauCAugUCGGGCu -3' miRNA: 3'- -CAGGa---CgGCGGCUUCu----------GUugAGCUCG- -5' |
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12488 | 3' | -55.1 | NC_003324.1 | + | 22950 | 0.66 | 0.735697 |
Target: 5'- cGUCCaGUCuCCGguGGCGAUgCGAGCg -3' miRNA: 3'- -CAGGaCGGcGGCuuCUGUUGaGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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