miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12489 5' -57.5 NC_003324.1 + 40529 0.66 0.607446
Target:  5'- cGAuCGAGCGCGGCgaGaaGCCucUGGu -3'
miRNA:   3'- uCU-GCUCGCGCUGgaCggCGGuuACU- -5'
12489 5' -57.5 NC_003324.1 + 5031 0.66 0.607446
Target:  5'- cGACuacGGCGUGAUCUcgaucgacaccGCCGCCAagGAc -3'
miRNA:   3'- uCUGc--UCGCGCUGGA-----------CGGCGGUuaCU- -5'
12489 5' -57.5 NC_003324.1 + 26534 0.66 0.596628
Target:  5'- uGAUGucGC-CGACaUUGCCGUCGAUGAa -3'
miRNA:   3'- uCUGCu-CGcGCUG-GACGGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 15115 0.66 0.595547
Target:  5'- uGGCGuccuGCGCcaugaucGACCUGCCGUCGc--- -3'
miRNA:   3'- uCUGCu---CGCG-------CUGGACGGCGGUuacu -5'
12489 5' -57.5 NC_003324.1 + 17493 0.66 0.585839
Target:  5'- cGACGAGgGCGACgUGgCaCGCgGAcuUGAg -3'
miRNA:   3'- uCUGCUCgCGCUGgAC-G-GCGgUU--ACU- -5'
12489 5' -57.5 NC_003324.1 + 1160 0.66 0.585839
Target:  5'- gGGGCGAGCGgGAa--GCCGCgAAaGAg -3'
miRNA:   3'- -UCUGCUCGCgCUggaCGGCGgUUaCU- -5'
12489 5' -57.5 NC_003324.1 + 52248 0.66 0.575087
Target:  5'- cGGCcAGUuCGuCCUGCCGCCGAaGAc -3'
miRNA:   3'- uCUGcUCGcGCuGGACGGCGGUUaCU- -5'
12489 5' -57.5 NC_003324.1 + 40314 0.66 0.575087
Target:  5'- cAGuCGAGCGgGAgCCaGCaccgaaGCCGGUGAa -3'
miRNA:   3'- -UCuGCUCGCgCU-GGaCGg-----CGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 30361 0.66 0.568658
Target:  5'- cGGCGGcuuGgGCGACCgUGCCuuggcccgcaucaucGCCGAUGGu -3'
miRNA:   3'- uCUGCU---CgCGCUGG-ACGG---------------CGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 16427 0.66 0.564382
Target:  5'- uGGACGA-CGCGAUCgacggcaacGCCGUCGcgGAc -3'
miRNA:   3'- -UCUGCUcGCGCUGGa--------CGGCGGUuaCU- -5'
12489 5' -57.5 NC_003324.1 + 43013 0.67 0.543137
Target:  5'- gGGACGAGacCGcCGGCgCagUGaCCGCCAAUGGu -3'
miRNA:   3'- -UCUGCUC--GC-GCUG-G--AC-GGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 56883 0.67 0.543137
Target:  5'- cGACG-GCGUGACCgaauuccCCGgCAAUGGa -3'
miRNA:   3'- uCUGCuCGCGCUGGac-----GGCgGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 49261 0.67 0.532613
Target:  5'- cGAgGAGC-CGAUCgagGCUGUCGAUGGu -3'
miRNA:   3'- uCUgCUCGcGCUGGa--CGGCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 24915 0.67 0.532613
Target:  5'- aAGACGgccgaccuugucGGCGCGAUCcGCCuGCCGAa-- -3'
miRNA:   3'- -UCUGC------------UCGCGCUGGaCGG-CGGUUacu -5'
12489 5' -57.5 NC_003324.1 + 45534 0.67 0.522162
Target:  5'- -aACGGGaau-ACCUGCCGCCAGUGu -3'
miRNA:   3'- ucUGCUCgcgcUGGACGGCGGUUACu -5'
12489 5' -57.5 NC_003324.1 + 21258 0.67 0.521122
Target:  5'- aGGAUGAGCGgauugccCGACgCUGCCGCUu---- -3'
miRNA:   3'- -UCUGCUCGC-------GCUG-GACGGCGGuuacu -5'
12489 5' -57.5 NC_003324.1 + 14569 0.67 0.511792
Target:  5'- -cAUGGGuCGCGGCCUGCCGgCGc--- -3'
miRNA:   3'- ucUGCUC-GCGCUGGACGGCgGUuacu -5'
12489 5' -57.5 NC_003324.1 + 33519 0.67 0.511792
Target:  5'- cGGCGAGCGUuACacgGacaaCGCCGAUGAa -3'
miRNA:   3'- uCUGCUCGCGcUGga-Cg---GCGGUUACU- -5'
12489 5' -57.5 NC_003324.1 + 57160 0.68 0.501509
Target:  5'- cGACuGAGUGCGaagccaaggGCCUGCCGCuCAcaGAc -3'
miRNA:   3'- uCUG-CUCGCGC---------UGGACGGCG-GUuaCU- -5'
12489 5' -57.5 NC_003324.1 + 30762 0.68 0.471228
Target:  5'- aAGcACGGGCGCGGuCCUG-CGCCGu--- -3'
miRNA:   3'- -UC-UGCUCGCGCU-GGACgGCGGUuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.